JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAS2R10_chr12_10820219_10831358	0/0	a0003	307	5	0	0	5	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0004	307	3	0	0	3	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0005	307	2	2	0	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0006	252	1	0	1	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0007	307	1	0	0	1	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0008	307	1	0	0	1	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0009	307	1	0	0	1	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	a0010	307	1	1	0	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R13_chr12_10902926_10914562	0/0	a0001	303	234	19	39	143	8	25	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/1	a0002	303	170	67	33	48	6	15	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	a0003	303	1	0	0	1	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	a0004	303	1	0	1	0	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	a0005	303	1	0	1	0	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R14_chr12_10932410_10944263	0/1	a0001	317	396	85	78	173	14	45	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	a0002	317	6	3	3	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	a0003	317	4	1	1	0	0	2	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	a0004	317	2	2	0	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	a0005	317	1	0	0	0	0	1	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	a0006	317	1	0	0	1	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	a0007	317	1	1	0	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R16_chr7_122989704_123000700	0/1	a0001	291	275	62	61	116	8	27	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	1/0	a0002	291	110	3	14	70	4	18	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	a0003	291	27	26	1	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	a0004	291	1	0	0	1	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	a0005	291	1	0	0	1	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	a0006	291	1	0	0	0	0	1	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	a0007	291	1	1	0	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R19_chr12_11016619_11027620	0/0	a0001	299	241	47	37	122	9	26	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/1	a0002	299	117	34	31	35	4	12	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0003	299	39	1	4	28	0	6	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0004	299	12	8	4	0	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0005	299	4	1	1	0	0	2	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0006	299	1	0	0	1	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0007	299	1	1	0	0	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0008	299	1	0	1	0	0	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R19_chr12_11016619_11027620	0/0	a0009	294	1	0	0	0	1	0	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R1_chr5_9622347_9635351	1/1	a0001	299	294	77	67	97	13	38	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	a0002	299	107	11	5	90	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	a0003	299	52	5	9	28	3	7	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	a0004	299	3	3	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	a0005	299	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	a0006	299	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R20_chr12_10990961_11003304	0/0	a0001	309	136	4	18	92	3	19	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	a0002	309	107	53	35	6	6	7	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/1	a0003	309	88	22	16	39	2	8	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	a0004	309	75	6	7	53	3	6	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	a0005	309	6	3	3	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	a0006	309	2	0	0	0	0	2	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	a0007	309	2	2	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	a0008	309	2	2	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304