JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAS2R20_chr12_10990961_11003304	0/0	a0009	309	1	0	1	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R30_chr12_11127958_11139644	0/0	a0001	319	262	57	39	124	10	32	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/1	a0002	319	119	33	31	39	4	11	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	a0003	319	2	2	0	0	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	a0004	319	1	0	0	1	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	a0005	319	1	0	0	0	0	1	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R31_chr12_11025387_11036407	0/0	a0001	309	204	6	23	147	6	22	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0002	309	103	43	22	20	6	12	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/1	a0003	309	84	24	12	37	2	8	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0004	309	35	11	18	0	2	4	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0005	309	6	6	0	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0006	309	3	0	1	0	0	2	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0007	309	3	0	0	3	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0008	309	1	0	0	1	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0009	309	1	0	0	1	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0010	309	1	1	0	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0011	309	1	0	0	1	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	a0012	305	1	1	0	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R38_chr7_141967631_141978773	0/0	a0001	333	219	38	50	110	6	15	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/1	a0002	333	173	35	21	82	8	26	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	1/0	a0003	333	16	14	1	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0004	333	16	0	5	11	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0005	333	8	0	3	0	0	5	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0006	333	2	2	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0007	333	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0008	333	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0009	333	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	a0010	333	1	0	0	1	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R39_chr7_143178419_143189435	1/1	a0001	338	359	91	68	152	10	36	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	a0002	338	3	3	0	0	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	a0003	338	2	2	0	0	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	a0004	338	2	2	0	0	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	a0005	155	1	0	0	1	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R39_chr7_143178419_143189435	0/0	a0006	338	1	0	0	1	0	0	copy fasta	TAS2R39	chr7	143178419	143189435
TAS2R3_chr7_141759097_141770197	1/1	a0001	316	408	93	69	189	14	41	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	a0002	316	1	0	0	1	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	a0003	316	1	0	1	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	a0004	316	1	0	0	0	0	1	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	a0005	316	1	1	0	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R40_chr7_143217037_143228079	1/1	a0001	323	297	73	65	101	14	42	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	a0002	323	24	13	4	5	0	2	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	a0003	323	4	4	0	0	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	a0004	322	4	4	0	0	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	a0005	323	3	0	1	2	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R41_chr7_143472873_143483796	0/0	a0000	0	1	0	0	0	0	1	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	1/1	a0001	307	340	93	53	141	14	37	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	a0002	307	111	0	25	72	4	10	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	a0003	307	2	2	0	0	0	0	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	a0004	307	1	1	0	0	0	0	copy fasta	TAS2R41	chr7	143472873	143483796
TAS2R41_chr7_143472873_143483796	0/0	a0005	307	1	0	0	1	0	0	copy fasta	TAS2R41	chr7	143472873	143483796