JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAS2R42_chr12_11180993_11191937	0/0	a0001	314	249	19	41	148	10	31	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/1	a0002	314	92	26	13	40	2	10	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	a0003	314	82	48	20	5	4	5	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	a0004	314	2	0	0	2	0	0	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	a0005	314	1	1	0	0	0	0	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R42_chr12_11180993_11191937	0/0	a0006	314	1	0	0	1	0	0	copy fasta	TAS2R42	chr12	11180993	11191937
TAS2R43_chr12_11086287_11097313	0/0	a0001	309	149	7	14	110	6	12	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	a0002	309	46	26	9	5	4	2	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	a0003	309	2	0	0	0	0	2	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	a0004	309	1	0	1	0	0	0	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	a0005	309	1	0	0	1	0	0	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R43_chr12_11086287_11097313	0/0	a0006	309	1	1	0	0	0	0	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R46_chr12_11056365_11067294	0/0	a0001	309	186	44	33	84	9	16	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/1	a0002	249	65	19	14	26	2	3	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0003	309	32	12	16	0	1	3	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0004	89	4	1	1	2	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0005	309	2	0	0	2	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0006	309	1	0	0	0	0	1	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0007	249	1	0	0	0	0	1	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0008	287	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0009	309	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0010	249	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R46_chr12_11056365_11067294	0/0	a0011	309	1	1	0	0	0	0	copy fasta	TAS2R46	chr12	11056365	11067294
TAS2R4_chr7_141771674_141786691	0/0	a0001	299	204	16	40	125	8	15	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	1/1	a0002	299	164	54	27	54	8	19	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0003	299	41	6	3	24	0	8	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0004	299	12	0	0	12	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0005	299	11	11	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0006	299	7	6	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0007	299	5	0	2	3	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0008	299	1	0	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	a0009	299	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R50_chr12_10980913_10991912	0/1	a0001	299	200	80	52	44	8	15	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	a0002	299	182	10	22	119	6	25	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	a0003	299	9	0	0	9	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	a0004	299	2	0	0	2	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	a0005	299	1	1	0	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R50_chr12_10980913_10991912	0/0	a0006	299	1	1	0	0	0	0	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R5_chr7_141785217_141796367	0/0	a0001	299	217	16	40	138	8	15	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	1/1	a0002	299	188	56	31	61	10	28	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0003	299	6	5	1	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0004	299	6	6	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0005	299	1	1	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0006	299	1	1	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0007	299	1	0	0	1	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0008	299	1	1	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	a0009	299	1	0	0	0	0	1	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R60_chr7_143438453_143449409	1/1	a0001	318	417	92	73	189	14	47	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	a0002	317	21	1	2	16	2	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	a0003	318	5	5	0	0	0	0	copy fasta	TAS2R60	chr7	143438453	143449409