JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TAS2R60_chr7_143438453_143449409	0/0	a0004	317	3	0	1	0	2	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	a0005	318	2	0	0	2	0	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	a0006	318	1	0	0	0	0	1	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R60_chr7_143438453_143449409	0/0	a0007	317	1	0	0	1	0	0	copy fasta	TAS2R60	chr7	143438453	143449409
TAS2R7_chr12_10796532_10807627	0/1	a0001	318	335	84	65	135	13	37	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0002	318	44	0	6	26	3	9	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0003	318	12	0	1	11	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0004	213	5	1	4	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0005	318	2	0	2	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0006	318	2	2	0	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0007	318	2	0	0	2	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0008	318	1	0	0	1	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0009	318	1	0	1	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0010	318	1	1	0	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0011	213	1	0	1	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	a0012	318	1	0	0	1	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R8_chr12_10801051_10812286	0/1	a0001	309	342	46	65	169	15	46	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0002	309	46	36	8	0	0	2	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0003	309	12	0	1	11	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0004	15	3	3	0	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0005	309	3	0	3	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0006	309	1	0	0	0	1	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0007	309	1	1	0	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	a0008	309	1	0	1	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R9_chr12_10804094_10815168	0/0	a0001	312	200	20	36	101	14	29	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/1	a0002	312	181	56	37	66	4	17	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	a0003	312	12	0	1	11	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	a0004	312	5	3	0	0	0	2	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	a0005	312	4	4	0	0	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	a0006	312	3	0	0	3	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	a0007	312	1	0	0	1	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	a0008	312	1	1	0	0	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TASL_chrX_30553809_30582766	1/1	a0001	301	317	76	53	140	13	33	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	a0002	301	1	0	0	0	0	1	copy fasta	TASL	chrX	30553809	30582766
TASOR2_chr10_5679838_5768740	0/1	a0001	2430	105	20	24	40	8	12	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0002	2427	93	19	2	65	1	6	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0003	2430	48	5	3	32	2	6	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0004	2430	30	2	11	17	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0005	2430	29	1	11	13	1	3	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0006	2427	12	10	0	0	1	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0007	2430	8	0	0	8	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0008	2430	8	2	3	0	1	2	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0009	2430	4	1	1	0	0	2	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0010	2430	4	4	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0011	2430	4	4	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	1/0	a0012	2430	3	2	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0013	2430	3	0	0	3	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0014	2430	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0015	2430	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0016	2430	3	3	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740