JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TASOR2_chr10_5679838_5768740	0/0	a0017	2430	2	0	0	2	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0018	2427	2	1	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0019	2427	2	2	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0020	2427	2	0	0	0	0	2	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0021	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0022	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0023	2430	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0024	2427	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0025	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0026	2430	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0027	2430	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0028	2427	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0029	2430	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0030	2427	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0031	2427	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0032	2427	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0033	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0034	2430	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0035	2430	1	0	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0036	2430	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0037	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0038	2430	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0039	2430	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0040	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0041	2427	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	a0042	2430	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR_chr3_56615132_56688265	0/1	a0001	1670	167	37	17	90	5	17	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0002	1670	122	32	17	54	0	19	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	1/0	a0003	1670	57	6	15	20	7	8	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0004	1670	5	5	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0005	1670	2	2	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0006	1670	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0007	1670	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0008	1670	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0009	1670	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0010	1670	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0011	1670	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0012	1670	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0013	1670	1	0	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	a0014	1670	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASP1_chr20_13384394_13643932	1/1	a0001	420	288	78	37	129	16	26	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	a0002	420	1	0	1	0	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	a0003	420	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TATDN1_chr8_124483498_124544085	1/1	a0001	297	335	87	52	142	12	40	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	a0002	297	1	0	0	1	0	0	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	a0003	297	1	0	0	1	0	0	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	a0004	297	1	1	0	0	0	0	copy fasta	TATDN1	chr8	124483498	124544085
TATDN2_chr3_10243459_10286218	0/0	a0001	761	137	25	16	76	0	20	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	1/0	a0002	761	76	18	34	7	9	7	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0003	761	50	10	14	12	1	13	copy fasta	TATDN2	chr3	10243459	10286218