JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCL3_chr19_44743708_44765044	0/0	a0005	253	1	0	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL6B_chr17_7018050_7034644	0/0	a0001	480	223	43	36	101	11	32	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	1/1	a0002	479	122	45	24	43	1	7	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	a0003	481	6	4	1	0	0	1	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	a0004	482	3	3	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	a0005	479	1	1	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	a0006	479	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6_chr3_187716381_187750468	1/0	a0001	706	332	49	70	164	14	34	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/1	a0002	706	67	38	3	21	2	2	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	a0003	706	2	0	2	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	a0004	706	1	0	1	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	a0005	706	1	1	0	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	a0006	706	1	0	0	1	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL7A_chr12_122016884_122067044	1/1	a0001	210	356	84	70	145	11	44	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	a0002	210	4	0	1	0	1	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	a0003	210	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	a0004	210	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7B_chr7_73531356_73562690	1/1	a0001	202	284	74	38	124	12	34	copy fasta	BCL7B	chr7	73531356	73562690
BCL7C_chr16_30882795_30899077	1/1	a0001	217	321	93	64	112	14	36	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	a0002	217	2	0	0	0	0	2	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	a0003	217	1	1	0	0	0	0	copy fasta	BCL7C	chr16	30882795	30899077
BCL9L_chr11_118891136_118930926	1/1	a0001	1499	216	82	45	49	8	30	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0002	1499	14	0	0	14	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0003	1499	8	8	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0004	1499	2	2	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0005	1499	1	0	0	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0006	1499	1	0	0	0	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0007	1499	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0008	1499	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0009	1499	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0010	1499	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0011	1499	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0012	1499	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0013	1499	1	0	0	0	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	a0014	1499	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9_chr1_147536501_147631216	1/1	a0001	1426	271	81	37	126	7	18	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	a0002	1426	38	3	9	10	9	7	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	a0003	1426	3	0	2	0	0	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	a0004	1426	2	0	2	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	a0005	1426	1	0	0	1	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	a0006	1426	1	0	0	1	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCLAF1_chr6_136251627_136294846	1/1	a0001	920	308	86	59	139	4	18	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	a0002	920	1	0	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	a0003	920	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF3_chrX_19907860_19996061	1/1	a0001	711	201	59	45	72	7	16	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	a0002	711	5	5	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	a0003	711	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCO1_chr16_81233689_81296142	1/1	a0001	547	263	80	40	113	4	24	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0002	547	68	8	22	22	8	8	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0003	547	55	1	10	30	5	9	copy fasta	BCO1	chr16	81233689	81296142