JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TATDN2_chr3_10243459_10286218	0/0	a0004	761	46	0	2	37	2	5	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0005	761	31	31	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0006	761	10	7	3	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0007	761	5	0	0	4	0	1	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/1	a0008	761	3	0	2	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0009	761	3	0	1	2	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0010	761	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0011	761	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0012	761	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0013	761	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	a0014	761	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN3_chr1_212786894_212821830	1/1	a0001	274	386	90	62	179	14	39	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	a0002	274	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	a0003	274	1	0	0	0	0	1	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	a0004	274	1	0	0	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	a0005	274	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TAT_chr16_71560660_71582092	1/1	a0001	454	327	76	65	134	13	37	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	a0002	454	43	19	9	6	3	6	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	a0003	454	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	a0004	454	1	0	0	0	0	1	copy fasta	TAT	chr16	71560660	71582092
TAX1BP1_chr7_27735162_27834767	1/1	a0001	789	350	84	62	157	12	33	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	a0002	789	6	2	2	0	2	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	a0003	789	4	4	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	a0004	789	1	0	0	0	0	1	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	a0005	789	1	0	0	1	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP3_chr17_3657895_3673578	1/1	a0001	124	405	82	76	184	13	48	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	a0002	124	3	0	0	0	1	2	copy fasta	TAX1BP3	chr17	3657895	3673578
TBATA_chr10_70766238_70790377	0/1	a0001	352	269	66	45	107	10	40	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	1/0	a0002	352	114	17	24	63	2	7	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0003	352	5	0	5	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0004	352	4	3	1	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0005	352	4	0	0	4	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0006	352	3	1	0	2	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0007	352	3	3	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0008	352	2	2	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0009	352	1	0	1	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0010	352	1	0	0	0	0	1	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0011	352	1	0	0	1	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0012	352	1	0	0	1	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0013	352	1	1	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBATA_chr10_70766238_70790377	0/0	a0014	352	1	1	0	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBC1D10A_chr22_30286990_30331941	1/1	a0001	508	368	87	72	152	16	39	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0002	508	8	0	4	0	2	2	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0003	508	6	0	0	6	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0004	508	2	0	0	2	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0005	508	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0006	508	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0007	508	1	0	0	0	0	1	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	a0008	71	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10B_chr16_30352102_30375494	1/0	a0001	808	206	67	53	62	10	13	copy fasta	TBC1D10B	chr16	30352102	30375494