JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D10B_chr16_30352102_30375494	0/1	a0002	808	64	14	17	20	2	10	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0003	808	34	1	3	11	2	17	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0004	808	3	0	0	3	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0005	794	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0006	804	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0007	808	1	0	0	1	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0008	804	1	0	1	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	a0009	808	1	0	0	1	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10C_chr11_67399083_67415089	1/1	a0001	446	368	95	73	153	14	31	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	a0002	446	1	0	1	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	a0003	446	1	1	0	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	a0004	446	1	0	0	1	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	a0005	446	1	0	0	0	0	1	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D12_chr10_94397541_94541332	1/1	a0001	775	342	82	58	139	18	43	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	a0002	775	1	0	0	0	0	1	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	a0003	775	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	a0004	775	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	a0005	775	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D13_chr9_128782253_128815430	0/0	a0001	400	206	88	22	70	2	24	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	1/1	a0002	400	191	8	50	101	10	20	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	a0003	400	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D14_chr4_6904826_7038114	1/1	a0001	693	284	93	54	101	9	25	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	a0002	693	17	2	6	1	1	7	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	a0003	693	2	0	0	2	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	a0004	693	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D15_chr12_71834759_71929313	1/1	a0001	674	356	86	57	167	12	32	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	a0002	674	2	0	0	2	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	a0003	674	2	1	1	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	a0004	674	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	a0005	674	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	a0006	674	1	0	0	1	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	a0007	674	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D16_chr17_79927343_80040872	1/1	a0001	767	315	84	55	119	16	39	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0002	767	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0003	767	2	1	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0004	767	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0005	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0006	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0007	767	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0008	767	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0009	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0010	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0011	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0012	767	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0013	767	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0014	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0015	767	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0016	767	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	a0017	767	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D17_chr19_49872702_49893750	0/0	a0001	648	224	62	40	88	5	29	copy fasta	TBC1D17	chr19	49872702	49893750