JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D17_chr19_49872702_49893750	1/1	a0002	648	184	29	32	100	6	15	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0003	648	4	0	0	4	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0004	648	2	2	0	0	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0005	648	1	1	0	0	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0006	648	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0007	648	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0008	648	1	0	0	0	1	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0009	648	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	a0010	648	1	0	0	1	0	0	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D19_chr4_26579084_26761223	1/1	a0001	526	303	87	43	131	12	28	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	a0002	526	4	3	1	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	a0003	526	2	0	0	0	0	2	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	a0004	526	1	0	0	1	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D1_chr4_37886084_38144173	0/0	a0001	1262	104	39	19	32	2	12	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0002	1262	49	18	5	23	0	3	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0003	1262	36	3	5	21	1	6	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	1/1	a0004	1262	26	3	6	8	2	5	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0005	1262	14	0	5	5	0	4	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0006	1262	13	2	0	9	0	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0007	1262	10	0	8	2	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0008	1262	9	0	0	7	0	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0009	1262	9	0	1	4	0	4	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0010	1262	8	3	4	0	1	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0011	1262	4	3	0	0	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0012	1262	4	1	2	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0013	1262	4	0	1	2	1	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0014	1262	2	2	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0015	1262	2	0	2	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0016	1262	2	1	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0017	1262	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0018	1262	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0019	1262	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0020	1262	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0021	1262	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0022	1262	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0023	1262	1	0	0	0	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0024	1262	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0025	1252	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0026	1262	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0027	1262	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0028	1262	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0029	1262	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	a0030	1262	1	0	0	0	1	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D20_chr20_430480_467533	1/1	a0001	403	366	95	71	150	14	34	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	a0002	403	34	3	5	19	0	7	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	a0003	403	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	a0004	403	1	0	0	0	0	1	copy fasta	TBC1D20	chr20	430480	467533
TBC1D21_chr15_73868564_73894214	1/1	a0001	336	337	89	73	127	10	36	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	a0002	336	40	0	0	33	0	7	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	a0003	336	3	0	3	0	0	0	copy fasta	TBC1D21	chr15	73868564	73894214