JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D21_chr15_73868564_73894214	0/0	a0004	336	1	0	0	0	0	1	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	a0005	336	1	1	0	0	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D22A_chr22_46757650_47180693	0/0	a0001	517	107	63	21	14	3	6	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	a0002	517	2	1	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	a0003	517	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	a0004	517	1	0	0	0	1	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	a0005	517	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22B_chr6_37252772_37337970	1/1	a0001	505	220	82	54	46	10	26	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	a0002	505	2	0	2	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D23_chr3_100255992_100330238	1/1	a0001	699	357	77	70	162	16	30	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	a0002	699	1	1	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D24_chr16_2470127_2510730	1/1	a0001	559	247	78	49	68	12	38	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	a0002	559	4	0	0	4	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	a0003	559	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	a0004	559	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	a0005	559	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	a0006	559	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D25_chrX_48534714_48567609	0/0	a0001	688	160	60	24	61	4	11	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	1/1	a0002	688	130	19	26	57	5	21	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	a0003	578	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	a0004	686	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	a0005	688	1	1	0	0	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	a0006	91	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D26_chr17_15727283_15749782	1/0	a0001	468	198	33	43	96	6	19	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/1	a0002	468	133	15	24	75	4	14	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0003	468	75	13	15	30	5	12	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0004	468	18	0	0	17	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0005	468	13	13	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0006	468	11	8	0	2	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0007	468	7	6	1	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0008	468	2	2	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0009	468	1	1	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0010	468	1	0	1	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0011	468	1	0	0	0	1	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0012	387	1	0	0	0	0	1	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0013	468	1	0	0	1	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0014	468	1	0	0	1	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	a0015	468	1	1	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D28_chr17_18629247_18649391	0/1	a0001	210	350	59	46	211	8	25	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	1/0	a0002	210	96	32	28	10	6	19	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	a0003	210	19	5	8	0	0	6	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	a0004	210	1	0	0	1	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D2B_chr15_77989985_78082711	1/0	a0001	963	173	62	27	55	10	18	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/1	a0002	963	79	14	18	28	6	12	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	a0003	963	18	0	6	2	0	10	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	a0004	963	5	0	0	5	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	a0005	963	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	a0006	963	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	a0007	963	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	a0008	963	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711