JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D2B_chr15_77989985_78082711	0/0	a0009	963	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2_chr9_98194011_98260649	1/1	a0001	928	197	16	42	105	9	23	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0002	928	74	10	15	38	3	8	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0003	928	55	40	9	3	2	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0004	928	8	3	2	0	2	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0005	928	6	6	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0006	928	4	4	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0007	928	2	0	0	2	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0008	928	2	0	1	0	0	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0009	928	2	2	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0010	25	2	0	0	2	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0011	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0012	928	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0013	928	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0014	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0015	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0016	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0017	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0018	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0019	928	1	0	0	0	0	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0020	928	1	0	1	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0021	928	1	0	0	0	0	1	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0022	928	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0023	928	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	a0024	928	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D30_chr12_64819647_64886033	1/1	a0001	761	217	25	50	94	11	35	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	a0002	761	76	70	5	0	0	1	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	a0003	761	3	0	0	0	1	2	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	a0004	761	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	a0005	761	1	0	1	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D31_chr8_123067707_123157153	1/1	a0001	1066	290	72	63	108	10	35	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0002	1066	8	8	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0003	1066	5	4	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0004	1066	5	0	5	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0005	1066	4	0	0	4	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0006	1066	3	3	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0007	1066	2	1	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0008	1066	1	1	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0009	1066	1	1	0	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0010	1066	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0011	1066	1	0	0	0	0	1	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D31_chr8_123067707_123157153	0/0	a0012	1066	1	0	1	0	0	0	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D32_chr6_121074494_121339480	0/0	a0001	1257	134	24	24	56	8	22	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0002	1257	58	30	6	22	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0003	1257	43	0	10	33	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/1	a0004	1257	39	5	12	8	3	10	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0005	1257	5	5	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0006	1257	3	2	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	1/0	a0007	1257	3	2	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0008	1257	1	0	0	1	0	0	copy fasta	TBC1D32	chr6	121074494	121339480