JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D32_chr6_121074494_121339480	0/0	a0009	1257	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0010	1257	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0011	1257	1	0	0	0	1	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0012	1257	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0013	1257	1	0	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	a0014	1253	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D3B_chr17_36160683_36181636	1/0	a0001	549	44	1	18	23	1	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0002	549	27	0	9	9	4	5	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0003	549	15	0	0	15	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0004	549	13	11	2	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0005	549	12	3	4	4	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0006	549	12	11	0	0	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0007	549	10	6	0	3	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0008	549	9	0	0	7	1	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0009	549	8	1	1	3	0	3	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0010	549	7	0	2	3	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0011	549	5	0	0	3	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0012	98	4	0	4	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0013	525	4	0	1	3	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0014	549	3	0	1	0	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0015	549	2	0	0	2	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0016	549	2	0	0	0	2	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0017	549	2	0	1	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0018	39	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0019	73	1	0	0	0	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0020	549	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0021	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0022	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0023	525	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0024	525	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0025	549	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0026	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0027	549	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0028	549	1	0	1	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0029	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0030	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0031	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0032	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0033	549	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0034	549	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0035	549	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0036	549	1	0	0	0	0	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	a0037	549	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3C_chr17_38052693_38073634	0/0	a0001	549	29	6	3	18	0	2	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0002	549	24	10	3	7	2	2	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0003	549	5	5	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0004	549	5	5	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0005	549	2	2	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0006	549	2	2	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0007	549	2	1	1	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634