JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D3C_chr17_38052693_38073634	0/0	a0008	549	2	0	0	2	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0009	549	2	0	2	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0010	549	1	0	0	1	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0011	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0012	549	1	0	1	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0013	549	1	0	0	1	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0014	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0015	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0016	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0017	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0018	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0019	549	1	0	0	1	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	a0020	549	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3D_chr17_37998976_38019908	0/0	a0001	549	24	7	5	7	1	4	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0002	549	15	8	1	4	1	1	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0003	549	8	2	0	4	0	2	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0004	549	7	4	2	0	0	1	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0005	549	2	2	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0006	549	1	0	0	0	0	1	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0007	549	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0008	549	1	0	1	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0009	549	1	0	0	0	0	1	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0010	549	1	0	1	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0011	549	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0012	549	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0013	549	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0014	549	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	a0015	549	1	0	0	1	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3E_chr17_38122951_38143868	0/0	a0001	549	8	5	1	2	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	a0002	549	8	7	0	1	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	a0003	549	6	0	1	5	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	a0004	549	5	5	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	a0005	549	3	3	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	a0006	549	2	2	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3G_chr17_36318884_36339759	0/0	a0001	549	66	11	10	31	4	10	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0002	549	43	4	14	17	0	8	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0003	549	21	0	17	3	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0004	549	5	4	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0005	549	3	0	2	1	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0006	549	3	2	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0007	549	2	0	0	2	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0008	549	1	1	0	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0009	549	1	0	0	1	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0010	549	1	0	0	1	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0011	549	1	0	1	0	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	a0012	549	1	0	0	0	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3H_chr17_36372531_36393435	0/0	a0001	549	47	0	13	26	2	6	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0002	549	25	5	4	8	2	6	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0003	549	19	2	1	15	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0004	549	13	1	3	8	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435