JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D3H_chr17_36372531_36393435	0/0	a0005	549	11	3	2	3	1	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0006	549	9	2	1	3	1	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0007	549	5	5	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0008	549	5	0	1	0	0	4	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0009	525	4	0	0	4	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0010	549	4	0	2	1	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0011	549	2	0	0	2	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0012	549	2	2	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0013	549	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0014	549	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0015	549	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0016	549	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0017	549	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0018	525	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0019	549	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0020	549	1	0	0	0	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0021	549	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	a0022	98	1	0	1	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3I_chr17_36248639_36269570	0/0	a0001	549	52	1	14	29	0	8	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0002	549	48	4	18	16	2	8	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0003	549	43	24	6	12	0	1	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0004	549	7	2	2	1	0	2	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0005	525	4	4	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0006	549	3	0	0	3	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0007	549	3	0	0	3	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0008	549	3	3	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0009	549	2	2	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0010	549	2	0	1	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0011	14	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0012	549	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0013	549	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0014	549	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0015	549	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0016	549	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0017	549	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0018	549	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0019	549	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0020	549	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0021	549	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0022	549	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0023	549	1	0	0	0	0	1	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0024	549	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	a0025	549	1	0	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3K_chr17_37919415_37940371	0/0	a0001	549	61	3	7	45	1	5	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0002	549	12	0	0	10	1	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0003	549	9	5	1	2	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0004	549	5	1	2	1	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0005	549	4	1	3	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0006	549	3	3	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0007	549	3	0	0	3	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371