JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D3K_chr17_37919415_37940371	0/0	a0008	317	2	0	0	2	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0009	14	1	0	1	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0010	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0011	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0012	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0013	549	1	0	1	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0014	549	1	0	0	1	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0015	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0016	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0017	549	1	0	1	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0018	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0019	549	1	0	0	0	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0020	549	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	a0021	549	1	0	0	0	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3L_chr17_37973155_37994060	0/0	a0001	549	5	5	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0002	549	3	3	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0003	549	2	1	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0004	549	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0005	549	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0006	484	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0007	549	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0008	549	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	a0009	549	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3_chr17_38176659_38197555	0/0	a0001	549	17	1	4	6	0	6	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0002	549	10	1	5	1	0	3	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0003	549	7	5	2	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0004	549	6	0	1	5	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0005	549	5	1	1	2	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0006	549	4	2	2	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0007	549	3	2	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0008	549	2	2	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0009	549	2	0	1	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0010	549	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0011	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0012	549	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0013	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0014	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0015	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0016	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0017	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0018	549	1	0	1	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0019	549	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0020	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0021	549	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0022	401	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0023	549	1	0	0	0	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0024	549	1	0	0	0	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	a0025	549	1	0	1	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D4_chr13_75278503_75487169	0/0	a0001	1298	86	12	24	27	3	20	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0002	1298	38	37	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169