JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D4_chr13_75278503_75487169	1/0	a0003	1298	35	14	10	8	0	2	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0004	1298	17	16	0	0	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0005	1298	13	1	1	8	1	2	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/1	a0006	1298	7	0	1	5	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0007	1298	4	4	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0008	1298	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0009	1298	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0010	1298	2	0	2	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0011	1298	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0012	1298	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0013	1298	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0014	1298	1	0	0	0	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0015	1298	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0016	1298	1	0	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0017	1298	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	a0018	1298	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D5_chr3_17152168_17747631	1/1	a0001	817	121	62	25	15	3	14	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	a0002	817	40	7	15	1	5	12	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	a0003	817	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D7_chr6_13299951_13333537	1/1	a0001	293	426	94	70	201	18	41	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0002	293	6	4	2	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0003	293	2	0	0	2	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0004	293	2	0	0	0	0	2	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0005	293	1	0	0	0	0	1	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0006	293	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0007	293	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	a0008	293	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D8B_chrX_106797673_106881150	1/1	a0001	1120	219	58	32	94	7	26	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	a0002	1120	2	0	0	0	2	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	a0003	50	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	a0004	1120	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	a0005	1120	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	a0006	1120	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	a0007	1120	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8_chr2_101002228_101156382	1/1	a0001	1155	152	28	29	74	4	15	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0002	1155	109	13	24	50	3	19	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0003	1155	13	0	0	12	0	1	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0004	1156	11	10	1	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0005	1155	8	0	2	1	3	2	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0006	1155	8	6	1	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0007	1155	6	6	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0008	1156	5	4	1	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0009	1155	5	5	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0010	1155	4	1	0	2	0	1	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0011	1156	4	4	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0012	1156	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0013	1155	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0014	1155	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0015	1155	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0016	1155	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382