JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCO1_chr16_81233689_81296142	0/0	a0004	547	3	0	3	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0005	547	3	0	1	1	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0006	547	2	2	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0007	547	1	0	0	1	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0008	547	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0009	547	1	0	0	0	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0010	547	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0011	547	1	0	0	0	1	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0012	547	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0013	547	1	0	0	0	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	a0014	547	1	0	0	1	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO2_chr11_112170512_112223946	0/1	a0001	579	340	73	74	151	9	32	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0002	579	8	1	3	0	1	3	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0003	579	7	3	0	0	1	3	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0004	471	4	3	1	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0005	579	4	4	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0006	579	2	0	0	2	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	1/0	a0007	579	2	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0008	579	2	2	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0009	579	2	2	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0010	579	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0011	579	1	0	0	0	1	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0012	579	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0013	579	1	0	1	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0014	579	1	0	1	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0015	579	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0016	579	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0017	579	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	a0018	579	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCORL1_chrX_129977635_130063071	1/1	a0001	1785	191	66	29	74	5	15	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0002	1785	5	0	5	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0003	1785	1	0	0	0	0	1	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0004	1785	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0005	1785	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0006	1785	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0007	1257	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0008	1785	1	0	1	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	a0009	1785	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCOR_chrX_40046251_40102958	1/1	a0001	1755	245	70	36	102	9	26	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0002	1754	2	0	0	2	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0003	299	2	0	0	2	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0004	588	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0005	1755	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0006	1755	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0007	1755	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0008	1367	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0009	1755	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0010	1537	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	a0011	1406	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCR_chr22_23175509_23323037	0/1	a0001	1271	215	81	46	56	10	21	copy fasta	BCR	chr22	23175509	23323037