JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBC1D8_chr2_101002228_101156382	0/0	a0017	1156	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	a0018	1155	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D9B_chr5_179857071_179912897	0/1	a0001	1233	212	30	41	108	3	29	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	1/0	a0002	1233	114	36	23	33	9	12	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0003	1233	9	9	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0004	1233	6	6	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0005	1233	5	5	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0006	1233	3	3	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0007	1233	2	0	0	0	0	2	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0008	145	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0009	1233	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0010	1233	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0011	1233	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0012	1233	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0013	1227	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0014	1233	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0015	1233	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0016	1233	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0017	1233	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	a0018	1233	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9_chr4_140615782_140761385	1/1	a0001	1266	291	86	63	104	10	26	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	a0002	1266	6	0	0	6	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	a0003	1266	1	0	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBCA_chr5_77686166_77781339	1/1	a0001	108	352	84	52	164	12	38	copy fasta	TBCA	chr5	77686166	77781339
TBCA_chr5_77686166_77781339	0/0	a0002	108	2	0	0	2	0	0	copy fasta	TBCA	chr5	77686166	77781339
TBCB_chr19_36110468_36130941	1/1	a0001	244	447	95	78	204	18	50	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	a0002	244	1	1	0	0	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCCD1_chr3_186541067_186572339	1/1	a0001	557	349	75	70	140	18	44	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	a0002	557	20	18	2	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	a0003	557	1	0	1	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	a0004	557	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	a0005	557	1	0	1	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	a0006	557	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	a0007	557	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCC_chr6_42739498_42751103	0/1	a0001	346	355	86	77	132	15	44	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	a0002	346	18	0	0	17	1	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	a0003	346	4	4	0	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	a0004	346	4	4	0	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	a0005	346	2	0	0	2	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	1/0	a0006	346	2	0	1	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	a0007	346	1	0	0	1	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCD_chr17_82747065_82950914	0/0	a0001	1192	139	33	21	64	6	15	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0002	1192	110	50	25	24	5	6	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/1	a0003	1192	27	0	5	11	2	8	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	1/0	a0004	1192	22	1	8	10	2	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0005	1192	3	3	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0006	1192	2	0	0	2	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0007	1192	1	0	0	0	1	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0008	1192	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0009	1192	1	0	0	0	0	1	copy fasta	TBCD	chr17	82747065	82950914