JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBCD_chr17_82747065_82950914	0/0	a0010	1192	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0011	1192	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0012	1192	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0013	1192	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0014	1192	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0015	1192	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0016	1192	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0017	1192	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0018	1188	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0019	1188	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0020	1192	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	a0021	1192	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCEL_chr11_121019102_121095776	1/1	a0001	424	262	80	56	92	10	22	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	a0002	424	2	0	2	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCE_chr1_235362427_235457443	1/1	a0001	527	261	70	60	85	8	36	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	a0002	527	3	3	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	a0003	527	2	2	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	a0004	527	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	a0005	527	1	0	0	1	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCK_chr4_106036599_106321209	0/0	a0001	893	235	69	46	97	6	17	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	a0002	893	70	4	10	42	1	13	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	1/0	a0003	893	8	0	0	7	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/1	a0004	893	2	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	a0005	893	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	a0006	893	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	a0007	893	1	0	0	0	1	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	a0008	893	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	a0009	893	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBK1_chr12_64447120_64507114	1/1	a0001	729	384	90	65	177	12	38	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	a0002	729	3	0	0	3	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	a0003	729	2	0	1	0	0	1	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	a0004	729	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	a0005	729	1	0	0	0	0	1	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	a0006	729	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBKBP1_chr17_47689161_47717052	1/1	a0001	615	309	76	46	139	9	37	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0002	463	16	1	6	6	0	3	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0003	463	13	0	3	9	0	1	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0004	615	9	2	4	0	2	1	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0005	599	6	2	0	4	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0006	615	6	0	5	0	1	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0007	452	4	1	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0008	615	3	0	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0009	463	3	0	2	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0010	615	3	3	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0011	615	3	0	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0012	615	2	0	0	2	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0013	463	2	0	2	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0014	463	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0015	463	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0016	452	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052