JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBKBP1_chr17_47689161_47717052	0/0	a0017	599	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0018	463	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0019	463	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	a0020	615	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBL1XR1_chr3_177014344_177202482	1/1	a0001	514	306	78	62	112	12	40	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1X_chrX_9460058_9724740	1/1	a0001	577	195	62	41	63	5	22	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	a0002	21	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	a0003	283	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	a0004	577	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	a0005	577	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1Y_chrY_6905697_7096683	1/0	a0001	522	126	18	18	68	5	16	copy fasta	TBL1Y	chrY	6905697	7096683
TBL1Y_chrY_6905697_7096683	0/0	a0002	522	1	0	1	0	0	0	copy fasta	TBL1Y	chrY	6905697	7096683
TBL1Y_chrY_6905697_7096683	0/1	a0003	522	1	0	0	0	0	0	copy fasta	TBL1Y	chrY	6905697	7096683
TBL2_chr7_73562537_73583579	1/1	a0001	447	372	87	70	161	15	37	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0002	447	4	0	2	0	1	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0003	447	3	0	2	0	1	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0004	447	1	0	0	0	1	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0005	447	1	0	0	0	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0006	447	1	0	0	0	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0007	447	1	1	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	a0008	447	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL3_chr16_1967053_1987929	1/0	a0001	808	338	80	48	164	15	30	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0002	808	48	1	19	10	2	16	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/1	a0003	808	11	1	7	0	1	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0004	808	11	9	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0005	808	4	0	0	4	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0006	808	4	4	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0007	808	2	0	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0008	808	2	0	0	2	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0009	808	2	2	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0010	808	2	0	0	2	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0011	808	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0012	808	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0013	808	1	0	0	1	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0014	808	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0015	808	1	0	0	0	0	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	a0016	808	1	0	0	1	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBPL1_chr6_133948224_133995432	1/1	a0001	186	330	88	64	128	14	34	copy fasta	TBPL1	chr6	133948224	133995432
TBPL2_chr14_55409210_55445616	1/1	a0001	343	381	89	61	180	12	37	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	a0002	343	20	6	9	1	1	3	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	a0003	298	1	0	0	0	1	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	a0004	303	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	a0005	343	1	0	0	1	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBP_chr6_170549369_170577859	0/0	a0001	337	119	9	12	87	4	7	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0002	338	96	16	29	39	1	11	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	1/1	a0003	339	57	4	20	14	6	11	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0004	336	50	40	3	4	0	3	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0005	335	18	14	1	3	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0006	340	16	0	3	7	1	5	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0007	334	14	8	2	3	1	0	copy fasta	TBP	chr6	170549369	170577859