JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBP_chr6_170549369_170577859	0/0	a0008	333	9	0	2	6	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0009	331	2	0	0	1	1	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0010	337	1	0	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0011	335	1	1	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	a0012	341	1	0	0	1	0	0	copy fasta	TBP	chr6	170549369	170577859
TBR1_chr2_161411297_161430870	1/1	a0001	682	355	84	62	151	18	38	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	a0002	682	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBRG1_chr11_124617864_124640926	0/0	a0000	0	1	0	0	0	1	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	1/1	a0001	411	417	95	80	183	13	44	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	a0002	411	39	5	0	34	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	a0003	411	2	0	0	2	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	a0004	411	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	a0005	411	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	a0006	411	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG4_chr7_45095100_45116697	1/0	a0001	631	345	86	55	147	13	43	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/1	a0002	631	49	0	13	31	3	1	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	a0003	631	2	2	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBX10_chr11_67626303_67644763	1/1	a0001	385	293	78	40	134	12	27	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	a0002	385	85	18	30	22	6	9	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	a0003	385	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	a0004	385	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX15_chr1_118878047_118993343	1/1	a0001	602	323	86	50	141	8	36	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0002	602	20	0	5	12	2	1	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0003	602	10	10	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0004	602	6	0	0	1	0	5	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0005	602	2	0	2	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0006	602	1	0	1	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0007	602	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	a0008	602	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX18_chr6_84727496_84769598	1/0	a0001	607	247	84	48	91	11	12	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/1	a0002	607	146	6	25	83	5	26	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0003	607	3	0	0	0	0	3	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0004	607	2	2	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0005	611	2	0	0	2	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0006	607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0007	607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0008	607	1	0	1	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	a0009	607	1	0	0	0	0	1	copy fasta	TBX18	chr6	84727496	84769598
TBX19_chr1_168275877_168319426	1/1	a0001	448	373	91	65	161	12	42	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	a0002	448	3	0	0	3	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	a0003	448	2	0	0	0	0	2	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	a0004	448	2	2	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	a0005	448	1	0	1	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	a0006	448	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX1_chr22_19755778_19772334	1/0	a0001	504	305	98	60	103	7	36	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/1	a0002	504	116	1	19	79	8	8	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	a0003	504	7	0	0	7	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	a0004	504	1	0	0	1	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	a0005	491	1	1	0	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	a0006	504	1	0	1	0	0	0	copy fasta	TBX1	chr22	19755778	19772334