JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBX1_chr22_19755778_19772334	0/0	a0007	504	1	0	0	0	1	0	copy fasta	TBX1	chr22	19755778	19772334
TBX20_chr7_35197430_35259100	1/1	a0001	447	301	86	60	120	5	28	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	a0002	447	1	0	0	0	1	0	copy fasta	TBX20	chr7	35197430	35259100
TBX21_chr17_47728236_47751122	1/1	a0001	535	360	82	70	152	14	40	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	a0002	535	30	1	8	17	0	4	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	a0003	535	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	a0004	535	1	0	0	1	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	a0005	535	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	a0006	535	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX22_chrX_80009753_80036774	0/1	a0001	520	316	79	60	140	9	27	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	a0002	520	4	0	0	4	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	a0003	520	2	0	0	0	2	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	a0004	520	1	0	0	1	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	a0005	520	1	1	0	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	a0006	520	1	0	0	0	0	1	copy fasta	TBX22	chrX	80009753	80036774
TBX2_chr17_61394843_61414466	1/1	a0001	712	426	93	79	187	18	47	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0002	712	5	0	0	5	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0003	712	1	0	0	0	0	1	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0004	712	1	0	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0005	712	1	0	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0006	712	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0007	712	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0008	712	1	0	1	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	a0009	712	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX3_chr12_114665255_114689175	1/1	a0001	723	424	89	74	197	18	44	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	a0002	723	7	7	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	a0003	723	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	a0004	723	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	a0005	723	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	a0006	723	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	a0007	723	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX4_chr17_61447422_61490110	1/1	a0001	546	255	48	59	105	12	29	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0002	546	72	4	12	49	2	5	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0003	546	60	39	5	11	1	4	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0004	546	16	4	3	8	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0005	546	2	0	0	2	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0006	546	2	0	1	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0007	546	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0008	546	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	a0009	546	1	0	0	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX5_chr12_114348911_114411144	1/1	a0001	518	382	86	77	153	16	48	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	a0002	518	2	0	0	2	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	a0003	518	2	2	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	a0004	518	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	a0005	518	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	a0006	518	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	a0007	518	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX6_chr16_30080793_30096924	1/1	a0001	436	375	79	74	170	10	40	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	a0002	436	3	3	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	a0003	436	2	0	0	2	0	0	copy fasta	TBX6	chr16	30080793	30096924