JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TBX6_chr16_30080793_30096924	0/0	a0004	436	1	0	0	1	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	a0005	436	1	1	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	a0006	436	1	0	0	1	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	a0007	436	1	1	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBXA2R_chr19_3589507_3611875	1/1	a0001	343	419	90	80	183	16	48	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	a0002	343	5	5	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	a0003	343	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	a0004	343	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	a0005	343	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	a0006	343	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXAS1_chr7_139824264_140025293	1/1	a0001	533	222	64	50	72	5	29	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0002	533	14	14	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0003	533	6	0	0	6	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0004	533	5	4	1	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0005	533	3	0	0	3	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0006	533	3	3	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0007	533	3	3	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0008	533	2	2	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0009	533	2	0	0	2	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0010	533	2	0	2	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0011	533	2	0	2	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0012	533	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0013	533	1	0	0	0	0	1	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0014	533	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0015	533	1	0	0	1	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0016	533	1	0	1	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	a0017	533	1	0	0	0	1	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXT_chr6_166152656_166172851	0/0	a0001	436	160	16	45	67	10	22	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0002	436	137	19	5	105	2	6	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	1/0	a0003	436	93	30	22	24	6	10	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/1	a0004	436	45	21	5	11	0	7	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0005	436	7	0	0	7	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0006	436	5	4	1	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0007	436	3	3	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0008	436	2	0	0	2	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0009	436	2	0	0	2	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0010	436	2	1	1	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0011	436	1	0	1	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0012	436	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0013	436	1	0	0	0	0	1	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	a0014	436	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TC2N_chr14_91774746_91872536	0/1	a0001	490	331	86	58	136	14	36	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	1/0	a0002	490	8	7	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	a0003	490	3	3	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	a0004	490	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	a0005	490	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TCAF1_chr7_143846375_143907176	0/1	a0001	921	240	59	43	118	9	10	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	1/0	a0002	921	7	5	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	a0003	921	4	4	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	a0004	921	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176