JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCAF1_chr7_143846375_143907176	0/0	a0005	921	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	a0006	921	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	a0007	921	1	0	0	0	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	a0008	921	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAIM_chr3_44333766_44414448	1/1	a0001	496	243	87	56	60	12	26	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	a0002	496	5	5	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAP_chr17_39660349_39671554	1/1	a0001	167	383	88	75	158	18	42	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	a0002	167	3	0	3	0	0	0	copy fasta	TCAP	chr17	39660349	39671554
TCEA1_chr8_53961556_54027448	1/1	a0001	301	312	88	60	130	6	26	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	a0002	301	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	a0003	301	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA2_chr20_64058198_64077347	1/1	a0001	299	382	93	79	148	16	44	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	a0002	299	2	1	1	0	0	0	copy fasta	TCEA2	chr20	64058198	64077347
TCEA3_chr1_23375909_23429748	1/1	a0001	348	376	90	71	151	16	46	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	a0002	348	1	0	0	1	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEA3_chr1_23375909_23429748	0/0	a0003	348	1	0	1	0	0	0	copy fasta	TCEA3	chr1	23375909	23429748
TCEAL1_chrX_103623975_103635953	1/1	a0001	159	312	73	57	141	9	30	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	a0002	159	1	1	0	0	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL1_chrX_103623975_103635953	0/0	a0003	158	1	0	0	1	0	0	copy fasta	TCEAL1	chrX	103623975	103635953
TCEAL2_chrX_102120679_102132712	1/1	a0001	227	278	61	45	135	8	27	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	a0002	227	27	13	8	0	5	1	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL2_chrX_102120679_102132712	0/0	a0003	227	4	4	0	0	0	0	copy fasta	TCEAL2	chrX	102120679	102132712
TCEAL3_chrX_103602963_103614927	1/1	a0001	200	271	58	51	120	9	31	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	a0002	200	16	14	2	0	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	a0003	200	2	0	0	2	0	0	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL3_chrX_103602963_103614927	0/0	a0004	200	1	0	0	0	0	1	copy fasta	TCEAL3	chrX	103602963	103614927
TCEAL4_chrX_103580515_103592729	1/1	a0001	215	303	75	52	137	11	26	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	a0002	101	1	0	0	1	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL4_chrX_103580515_103592729	0/0	a0003	215	1	1	0	0	0	0	copy fasta	TCEAL4	chrX	103580515	103592729
TCEAL5_chrX_103268691_103281750	1/1	a0001	206	282	44	52	139	13	32	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	a0002	206	48	24	3	21	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	a0003	206	4	4	0	0	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL5_chrX_103268691_103281750	0/0	a0004	60	1	0	0	1	0	0	copy fasta	TCEAL5	chrX	103268691	103281750
TCEAL7_chrX_103325239_103337326	1/1	a0001	100	315	74	54	142	13	30	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL7_chrX_103325239_103337326	0/0	a0002	100	1	0	0	1	0	0	copy fasta	TCEAL7	chrX	103325239	103337326
TCEAL8_chrX_103247995_103260155	1/1	a0001	117	332	72	54	161	11	32	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL8_chrX_103247995_103260155	0/0	a0002	117	1	0	0	1	0	0	copy fasta	TCEAL8	chrX	103247995	103260155
TCEAL9_chrX_103351506_103363462	1/1	a0001	104	330	76	60	148	13	31	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	a0002	8	1	0	0	0	0	1	copy fasta	TCEAL9	chrX	103351506	103363462
TCEANC2_chr1_54048608_54111082	1/1	a0001	208	349	94	64	155	10	24	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	a0002	208	5	0	0	5	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC_chrX_13648141_13670409	0/1	a0001	351	164	31	26	84	5	17	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	1/0	a0002	351	141	40	25	56	6	13	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	a0003	351	10	3	2	5	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	a0004	351	6	4	2	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	a0005	351	1	0	1	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	a0006	351	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	a0007	94	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCERG1L_chr10_131087391_131316721	1/1	a0001	586	301	71	65	115	14	34	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	a0002	586	8	7	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721