JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCF7L1_chr2_85128392_85315387	1/0	a0001	588	131	39	30	44	5	12	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/1	a0002	587	86	38	15	18	7	7	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0003	587	4	4	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0004	588	3	0	2	0	0	1	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0005	588	3	3	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0006	588	2	2	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0007	588	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0008	588	1	0	0	1	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0009	588	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0010	588	1	0	0	1	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0011	588	1	0	1	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0012	587	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	a0013	587	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L2_chr10_112945247_113172678	1/1	a0001	619	175	79	47	20	9	18	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0002	619	13	0	2	8	0	3	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0003	619	5	4	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0004	619	2	2	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0005	619	1	0	0	1	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0006	619	1	0	0	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0007	619	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0008	619	1	0	0	0	1	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	a0009	619	1	0	0	1	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7_chr5_134109681_134153210	1/1	a0001	384	327	76	57	141	14	37	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0002	384	7	1	4	0	0	2	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0003	384	4	0	0	0	0	4	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0004	384	2	2	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0005	384	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0006	384	1	0	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0007	384	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	a0008	384	1	0	0	0	0	1	copy fasta	TCF7	chr5	134109681	134153210
TCFL5_chr20_62836005_62866822	1/1	a0001	500	336	75	77	136	11	35	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0002	500	42	13	4	21	1	3	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0003	498	3	3	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0004	500	3	3	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0005	500	2	2	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0006	500	1	0	0	0	1	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0007	500	1	0	0	0	1	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0008	500	1	0	0	1	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	a0009	500	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCHHL1_chr1_152079141_152094064	1/1	a0001	904	316	70	60	127	14	43	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0002	655	29	0	12	17	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0003	904	12	12	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0004	293	3	3	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0005	904	3	0	0	3	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0006	904	2	2	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0007	904	2	2	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0008	904	1	0	1	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0009	904	1	0	0	0	0	1	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0010	904	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	a0011	904	1	0	1	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064