JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BCR_chr22_23175509_23323037	1/0	a0002	1271	64	4	13	33	3	10	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0003	1271	7	0	5	2	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0004	1271	3	3	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0005	1271	2	0	0	2	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0006	1271	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0007	1271	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0008	1271	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0009	1271	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	a0010	1271	1	0	0	0	1	0	copy fasta	BCR	chr22	23175509	23323037
BCS1L_chr2_218654683_218668443	1/1	a0001	419	337	75	56	152	12	40	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	a0002	419	17	17	0	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	a0003	419	2	0	2	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	a0004	419	1	1	0	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	a0005	419	1	1	0	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BDH1_chr3_197504783_197560968	0/1	a0001	343	314	88	71	102	12	40	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	a0002	343	2	1	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	a0003	343	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	a0004	343	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	a0005	343	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH2_chr4_103072592_103104834	1/1	a0001	245	302	80	45	137	8	30	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	a0002	245	65	6	17	27	2	13	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	a0003	245	9	0	0	9	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	a0004	245	3	3	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	a0005	245	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	a0006	245	1	0	0	0	0	1	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	a0007	245	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDKRB1_chr14_96251210_96269763	1/1	a0001	353	424	86	74	197	18	47	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0002	353	8	6	2	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0003	353	5	0	0	5	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0004	353	2	0	2	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0005	353	2	2	0	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0006	353	1	0	0	0	0	1	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0007	353	1	0	0	1	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	a0008	353	1	0	0	1	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB2_chr14_96199839_96249164	1/1	a0001	391	415	81	75	192	17	48	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	a0002	391	10	8	2	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	a0003	391	9	2	5	0	1	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	a0004	391	1	0	0	0	0	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	a0005	391	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDNF_chr11_27649893_27705455	1/1	a0001	247	280	85	61	90	13	29	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	a0002	247	80	1	11	54	3	11	copy fasta	BDNF	chr11	27649893	27705455
BDP1_chr5_71450651_71572820	0/0	a0001	2624	88	4	15	55	1	13	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0002	2624	75	6	13	49	2	5	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0003	2624	58	19	10	19	3	7	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0004	2624	11	3	3	3	0	2	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0005	2624	10	9	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0006	2624	9	9	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0007	2624	8	0	6	0	1	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0008	2624	7	7	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0009	2624	6	5	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820