JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCHH_chr1_152101317_152120444	0/0	a0046	1932	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0047	1944	2	1	1	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0048	1992	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0049	1926	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0050	1925	2	0	1	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0051	1919	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0052	1931	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0053	1949	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0054	1943	2	0	1	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0055	1955	2	0	2	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0056	1955	2	0	1	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0057	1955	2	0	1	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0058	1967	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0059	1979	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0060	1979	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0061	1985	2	1	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0062	1943	2	2	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0063	403	2	0	0	2	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0064	1986	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0065	1967	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	1/0	a0066	1943	1	0	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0067	1967	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0068	1932	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0069	1915	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0070	1943	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0071	1943	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0072	1949	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0073	1939	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0074	1961	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0075	1945	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0076	1973	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0077	1968	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0078	1939	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0079	1908	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0080	1938	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0081	1944	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0082	1944	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0083	1950	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0084	1956	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0085	1962	1	0	0	0	1	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0086	1968	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0087	1992	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0088	2004	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0089	1916	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0090	1907	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0091	1919	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0092	1980	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0093	1943	1	0	0	0	0	1	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0094	1937	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	a0095	1937	1	0	0	1	0	0	copy fasta	TCHH	chr1	152101317	152120444