JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCHP_chr12_109895274_109923069	0/0	a0004	498	3	3	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0005	498	3	2	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0006	498	2	0	0	2	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0007	498	2	0	0	2	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0008	498	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0009	266	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0010	498	1	1	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0011	498	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	a0012	498	1	1	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCIM_chr8_40148482_40160310	0/1	a0001	106	440	89	80	206	18	46	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	1/0	a0002	106	9	8	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	a0003	106	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIRG1_chr11_68034025_68055895	1/1	a0001	830	360	86	62	153	15	42	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0002	830	8	0	8	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0003	830	4	0	0	4	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0004	832	4	3	1	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0005	830	3	0	2	0	1	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0006	830	2	2	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0007	830	1	1	0	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0008	830	1	0	0	0	0	1	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0009	830	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0010	830	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0011	830	1	0	1	0	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0012	830	1	0	0	0	0	1	copy fasta	TCIRG1	chr11	68034025	68055895
TCIRG1_chr11_68034025_68055895	0/0	a0013	830	1	0	0	1	0	0	copy fasta	TCIRG1	chr11	68034025	68055895
TCL1A_chr14_95704947_95719125	1/1	a0001	114	337	85	58	128	18	46	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	a0002	114	34	0	2	32	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	a0003	114	3	3	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1B_chr14_95681426_95697628	1/1	a0001	128	342	80	49	177	7	27	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	a0002	128	98	16	33	27	9	13	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	a0003	128	2	0	0	0	0	2	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	a0004	128	1	0	0	1	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	a0005	96	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	a0006	128	1	0	0	1	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	a0007	128	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCN1_chr11_59847808_59871487	1/1	a0001	433	308	88	58	116	13	31	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	a0002	433	18	7	8	0	2	1	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	a0003	433	4	0	2	0	2	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	a0004	433	2	2	0	0	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	a0005	433	2	0	0	2	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	a0006	433	1	1	0	0	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	a0007	433	1	0	0	0	1	0	copy fasta	TCN1	chr11	59847808	59871487
TCN2_chr22_30602174_30632271	0/0	a0001	427	175	26	30	105	3	11	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	1/1	a0002	427	161	2	27	97	6	27	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0003	427	33	12	13	0	5	3	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0004	427	26	23	2	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0005	427	22	16	5	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0006	427	10	5	2	1	0	2	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0007	427	9	7	1	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0008	427	8	0	0	8	0	0	copy fasta	TCN2	chr22	30602174	30632271