JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCN2_chr22_30602174_30632271	0/0	a0009	427	5	0	3	0	2	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0010	427	4	4	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0011	427	2	0	0	2	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0012	427	2	0	0	0	0	2	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0013	427	2	0	1	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0014	427	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0015	427	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0016	427	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0017	427	1	0	0	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0018	427	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0019	427	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	a0020	427	1	1	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCOF1_chr5_150352697_150405293	1/0	a0001	1489	206	56	32	92	5	20	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0002	1489	53	5	7	24	3	14	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0003	1489	26	13	4	5	2	2	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0004	1489	26	1	2	15	2	6	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/1	a0005	1489	15	0	8	0	3	3	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0006	1489	6	6	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0007	1489	4	4	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0008	1489	4	4	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0009	1489	3	2	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0010	1489	3	0	1	0	1	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0011	1489	2	0	0	2	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0012	1489	2	2	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0013	1489	2	0	0	1	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0014	1489	1	0	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0015	1489	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0016	1489	1	0	0	1	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0017	1489	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0018	1489	1	0	0	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0019	1489	1	0	0	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0020	1489	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0021	1489	1	0	0	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0022	1489	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	a0023	1489	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCP10L_chr21_32568721_32590523	1/1	a0001	215	282	72	54	113	10	31	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	a0002	215	102	8	23	52	4	15	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	a0003	215	8	8	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	a0004	87	1	0	1	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	a0005	215	1	0	0	1	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	a0006	215	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	a0007	215	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP11L1_chr11_33034572_33078550	1/0	a0001	509	350	84	62	157	13	33	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/1	a0002	509	36	5	5	19	3	3	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	a0003	509	4	3	1	0	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L2_chr12_106297733_106352003	0/0	a0001	519	231	87	50	58	11	25	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	1/0	a0002	519	109	4	24	60	5	15	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	a0003	519	2	2	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/1	a0004	519	1	0	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	a0005	519	1	1	0	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003