JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TCTN1_chr12_110609129_110654430	0/0	a0008	592	1	0	1	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	a0009	592	1	0	1	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN2_chr12_123666113_123713399	1/1	a0001	697	232	89	45	46	18	32	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	a0002	697	2	2	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	a0003	697	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	a0004	697	1	0	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN3_chr10_95658401_95698927	1/1	a0001	607	330	59	72	153	14	30	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	a0002	607	57	27	3	19	3	5	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	a0003	607	7	0	2	4	0	1	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	a0004	607	3	0	1	0	0	2	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	a0005	607	1	1	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	a0006	607	1	0	0	0	1	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	a0007	607	1	1	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TDGF1P3_chrX_110515896_110528021	1/1	a0001	188	247	59	41	110	11	24	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	a0002	188	17	15	2	0	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	a0003	188	1	0	0	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1_chr3_46572788_46587457	1/1	a0001	188	220	39	37	117	6	19	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	a0002	188	162	47	26	59	9	21	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	a0003	188	56	2	10	35	1	8	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	a0004	188	5	4	1	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	a0005	188	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDG_chr12_103960872_103993874	1/1	a0001	410	294	81	55	96	13	47	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	a0002	410	85	1	11	68	2	3	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	a0003	410	63	14	6	41	2	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	a0004	410	1	0	0	0	1	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	a0005	410	1	0	0	1	0	0	copy fasta	TDG	chr12	103960872	103993874
TDO2_chr4_155898696_155925406	0/1	a0001	406	371	90	74	146	15	45	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	a0002	406	2	0	0	0	1	1	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	a0003	406	2	0	2	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	a0004	406	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	a0005	406	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDP1_chr14_89950927_90049764	1/1	a0001	608	208	58	44	79	4	21	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0002	608	35	25	3	4	0	3	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0003	608	8	8	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0004	608	6	0	6	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0005	608	3	3	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0006	608	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0007	608	1	0	1	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0008	608	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	a0009	608	1	0	0	1	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP2_chr6_24644979_24671899	1/1	a0001	362	261	46	53	108	18	34	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0002	362	134	39	19	70	0	6	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0003	362	16	4	3	9	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0004	362	3	3	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0005	362	1	0	1	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0006	362	1	0	0	1	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0007	362	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	a0008	362	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDRD10_chr1_154497219_154553147	1/0	a0001	351	230	76	38	91	3	21	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	a0002	351	74	11	14	36	2	11	copy fasta	TDRD10	chr1	154497219	154553147