JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TDRD10_chr1_154497219_154553147	0/1	a0003	351	25	0	12	5	5	2	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	a0004	351	1	1	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	a0005	351	1	0	0	1	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	a0006	351	1	0	0	1	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD12_chr19_32714767_32834580	0/0	a0001	1330	128	26	11	78	4	9	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0002	1330	89	13	12	57	0	7	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	1/1	a0003	1330	85	18	18	29	4	14	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0004	1330	24	19	0	0	0	5	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0005	1330	11	0	1	10	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0006	1330	8	1	1	1	1	4	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0007	1330	4	0	0	4	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0008	1330	4	0	0	4	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0009	1330	4	0	2	0	1	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0010	1330	3	3	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0011	1330	2	0	0	2	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0012	1330	2	2	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0013	1330	2	0	2	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0014	1330	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0015	1330	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0016	1330	1	0	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0017	1330	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0018	1330	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0019	1330	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0020	1330	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0021	1330	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0022	1330	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0023	1330	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0024	800	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0025	1330	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0026	1330	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	a0027	1330	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD15_chr2_21118968_21149368	0/1	a0001	1934	175	33	22	96	5	18	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	1/0	a0002	1934	147	45	32	48	7	14	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0003	1934	7	7	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0004	1934	3	0	0	3	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0005	1934	2	0	0	2	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0006	1934	2	1	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0007	1934	2	0	2	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0008	1934	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0009	1934	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0010	1934	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0011	1934	1	0	1	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0012	1934	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0013	1934	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0014	1934	1	0	0	0	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0015	1934	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0016	1934	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0017	1934	1	0	0	1	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0018	1934	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	a0019	1934	1	1	0	0	0	0	copy fasta	TDRD15	chr2	21118968	21149368