JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TDRD6_chr6_46682885_46709319	0/0	a0017	2096	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0018	2096	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0019	998	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0020	2096	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0021	2096	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0022	2096	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0023	2096	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0024	1192	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0025	2096	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0026	2096	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0027	2096	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0028	2096	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0029	2096	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0030	2096	1	0	1	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	a0031	2096	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD7_chr9_97407096_97501125	0/0	a0001	1098	193	49	38	84	2	20	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	1/1	a0002	1098	155	32	31	68	4	18	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	a0003	1098	3	3	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	a0004	1098	1	0	0	1	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	a0005	1098	1	0	1	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	a0006	1098	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	a0007	1098	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	a0008	1098	1	0	0	1	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD9_chr14_103923456_104057667	1/1	a0001	1382	352	78	72	152	17	31	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0002	1382	9	1	0	8	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0003	1382	5	5	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0004	1382	2	2	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0005	1382	1	0	0	0	0	1	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0006	1382	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0007	1382	1	0	0	0	1	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	a0008	1382	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRKH_chr1_151768494_151795500	1/1	a0001	561	410	95	74	179	18	42	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	a0002	561	3	0	0	3	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	a0003	561	1	0	0	0	0	1	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	a0004	561	1	0	0	0	0	1	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	a0005	561	1	1	0	0	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	a0006	412	1	0	0	1	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	a0007	561	1	0	0	1	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRP_chr8_484946_549834	1/1	a0001	185	313	82	58	130	10	31	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	a0002	183	120	6	23	74	6	11	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	a0003	185	10	9	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	a0004	185	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TEAD1_chr11_12669421_12949737	1/1	a0001	411	205	78	44	53	6	22	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	a0002	411	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD2_chr19_49335595_49367416	1/1	a0001	451	342	86	64	148	12	30	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0002	451	5	0	0	5	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0003	451	2	2	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0004	451	2	2	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0005	56	1	0	0	0	0	1	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0006	455	1	1	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416