JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BDP1_chr5_71450651_71572820	0/0	a0010	2624	5	5	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/1	a0011	2624	5	0	3	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0012	2624	5	4	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0013	2624	5	0	0	4	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0014	2624	2	0	0	2	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0015	2624	2	0	0	0	0	2	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0016	2624	2	1	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0017	2624	2	2	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0018	2624	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0019	2624	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0020	2624	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0021	2624	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0022	2624	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0023	2624	1	0	0	0	1	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0024	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0025	2624	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0026	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0027	2624	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0028	2624	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0029	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0030	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0031	2624	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0032	1589	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0033	2624	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0034	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0035	2624	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0036	2624	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0037	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0038	2624	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0039	2624	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0040	2624	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0041	2624	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	a0042	2624	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BEAN1_chr16_66422295_66487833	1/0	a0001	259	291	85	52	110	9	34	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	a0002	259	2	0	0	2	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/1	a0003	259	2	0	0	0	1	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	a0004	259	1	0	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	a0005	259	1	1	0	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	a0006	259	1	0	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BECN1_chr17_42805134_42829282	1/1	a0001	450	273	82	56	90	12	31	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	a0002	450	1	0	0	0	0	1	copy fasta	BECN1	chr17	42805134	42829282
BECN2_chr1_241952767_241964062	1/0	a0001	431	298	62	43	149	12	31	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0002	431	122	30	32	42	4	14	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0003	431	11	3	0	6	0	2	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/1	a0004	431	7	0	2	0	2	2	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0005	431	2	0	0	1	0	1	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0006	419	1	0	1	0	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0007	431	1	0	0	1	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0008	431	1	1	0	0	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	a0009	431	1	0	0	1	0	0	copy fasta	BECN2	chr1	241952767	241964062