JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEAD2_chr19_49335595_49367416	0/0	a0007	451	1	0	0	1	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0008	451	1	0	0	0	0	1	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	a0009	451	1	1	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD3_chr6_35468597_35502079	1/1	a0001	54	393	84	66	179	14	48	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	a0002	428	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	a0003	54	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	a0004	54	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD4_chr12_2954397_3045676	1/1	a0001	43	276	90	68	72	12	32	copy fasta	TEAD4	chr12	2954397	3045676
TECPR1_chr7_98209624_98257232	1/1	a0001	1165	229	56	34	97	10	30	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0002	1165	81	19	15	43	2	2	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0003	1165	13	0	0	13	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0004	1165	6	4	2	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0005	1165	6	6	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0006	1165	4	4	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0007	1165	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0008	1165	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0009	1165	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0010	1165	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0011	1165	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0012	1165	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	a0013	1165	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR2_chr14_102357941_102507477	0/1	a0001	1411	163	54	23	52	12	21	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0002	1411	70	9	17	27	6	11	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	1/0	a0003	1411	48	0	10	36	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0004	1411	18	2	2	11	0	3	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0005	1411	13	12	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0006	1411	6	0	0	5	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0007	1411	5	0	3	0	0	2	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0008	1411	2	0	1	0	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0009	1411	2	0	2	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0010	1411	2	0	0	2	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0011	1411	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0012	1411	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0013	1411	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0014	1411	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	a0015	1411	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECRL_chr4_64272702_64414450	1/1	a0001	363	251	65	64	87	8	25	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	a0002	363	17	15	1	0	0	1	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	a0003	363	2	2	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	a0004	363	1	0	0	1	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	a0005	363	1	0	1	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECR_chr19_14524594_14570980	1/1	a0001	308	323	92	79	97	15	38	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	a0002	61	9	0	3	3	1	2	copy fasta	TECR	chr19	14524594	14570980
TECTA_chr11_121096243_121196490	0/0	a0001	2155	166	21	31	88	3	23	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/1	a0002	2155	85	13	15	45	3	8	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0003	2155	55	34	15	1	3	2	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0004	2155	4	0	0	4	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0005	2155	3	0	0	3	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0006	2155	2	0	0	0	2	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0007	2155	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490