JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TECTA_chr11_121096243_121196490	0/0	a0008	2155	2	0	0	0	0	2	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0009	2155	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0010	2155	2	1	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0011	2155	2	2	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0012	2155	2	0	1	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0013	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0014	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0015	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0016	2155	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0017	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0018	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0019	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0020	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0021	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0022	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0023	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	1/0	a0024	2155	1	0	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0025	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0026	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0027	2155	1	0	0	0	0	1	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0028	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0029	2155	1	0	0	0	1	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0030	2155	1	0	1	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0031	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0032	2155	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	a0033	2155	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTB_chr10_112278400_112310038	1/1	a0001	329	434	100	74	196	14	48	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	a0002	329	2	0	2	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	a0003	329	1	0	1	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	a0004	329	1	0	1	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TEC_chr4_48130783_48274838	1/1	a0001	631	344	84	61	148	16	33	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	a0002	631	1	0	0	0	0	1	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	a0003	631	1	0	1	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEDC1_chr14_105486246_105504248	0/0	a0000	0	30	4	6	15	0	5	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	1/1	a0001	495	339	60	70	152	16	39	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0002	495	22	20	2	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0003	495	21	0	0	21	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0004	495	6	5	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0005	495	2	1	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0006	495	2	0	1	0	0	1	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0007	495	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0008	495	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0009	495	1	0	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0010	495	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0011	495	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0012	495	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0013	495	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0014	495	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0015	495	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0016	495	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248