JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEDC1_chr14_105486246_105504248	0/0	a0017	495	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0018	495	1	0	0	0	0	1	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0019	495	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	a0020	495	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC2_chr16_2455109_2469963	1/1	a0001	433	367	92	65	149	14	45	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0002	433	3	0	0	3	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0003	433	2	2	0	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0004	433	1	0	0	1	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0005	433	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0006	438	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0007	433	1	0	0	0	0	1	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0008	433	1	0	0	1	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	a0009	433	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDDM1_chr1_182393117_182405667	0/0	a0001	273	303	76	41	148	8	30	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	1/1	a0002	273	113	17	31	44	6	13	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	a0003	273	1	1	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	a0004	273	1	0	0	0	0	1	copy fasta	TEDDM1	chr1	182393117	182405667
TEFM_chr17_30893986_30911238	1/1	a0001	360	282	73	62	106	14	25	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	a0002	360	70	7	11	40	0	12	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	a0003	360	7	7	0	0	0	0	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	a0004	360	2	0	0	0	0	2	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	a0005	360	1	1	0	0	0	0	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	a0006	360	1	0	0	0	0	1	copy fasta	TEFM	chr17	30893986	30911238
TEFM_chr17_30893986_30911238	0/0	a0007	360	1	0	1	0	0	0	copy fasta	TEFM	chr17	30893986	30911238
TEF_chr22_41376942_41404326	1/1	a0001	303	386	90	56	172	18	48	copy fasta	TEF	chr22	41376942	41404326
TEKT1_chr17_6792993_6836729	1/0	a0001	418	251	61	58	86	14	31	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	a0002	418	95	6	17	62	3	7	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	a0003	418	28	28	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/1	a0004	418	16	0	2	8	0	5	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	a0005	418	10	0	0	9	0	1	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	a0006	418	3	0	0	3	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	a0007	418	2	0	1	0	1	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	a0008	418	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT2_chr1_36079094_36093275	1/1	a0001	430	347	81	67	155	12	30	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0002	430	51	2	4	44	0	1	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0003	430	6	6	0	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0004	430	4	0	4	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0005	430	3	3	0	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0006	430	2	0	0	2	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0007	430	2	0	0	2	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0008	23	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0009	430	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0010	430	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0011	430	1	0	0	0	0	1	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0012	430	1	0	1	0	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0013	430	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	a0014	430	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT3_chr17_15298812_15346597	0/1	a0001	490	143	17	30	68	6	21	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	1/0	a0002	490	140	30	30	67	2	10	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0003	490	66	4	12	38	6	6	copy fasta	TEKT3	chr17	15298812	15346597