JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEKT3_chr17_15298812_15346597	0/0	a0004	490	22	21	1	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0005	490	10	7	1	1	0	1	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0006	490	9	0	0	9	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0007	163	2	2	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0008	490	2	2	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0009	490	1	0	0	1	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0010	490	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0011	490	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	a0012	490	1	1	0	0	0	0	copy fasta	TEKT3	chr17	15298812	15346597
TEKT4_chr2_94866430_94881823	1/0	a0001	435	238	46	41	112	8	30	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/1	a0002	435	153	41	29	72	2	8	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0003	435	12	0	7	1	2	2	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0004	435	5	0	1	4	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0005	435	5	5	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0006	435	2	0	1	0	0	1	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0007	435	2	0	0	2	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0008	435	2	0	0	2	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0009	435	1	0	0	1	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0010	435	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0011	435	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0012	435	1	0	1	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0013	435	1	0	0	0	0	1	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0014	435	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	a0015	435	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT5_chr16_10622501_10699930	0/0	a0001	485	206	67	24	90	2	23	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	1/1	a0002	485	112	22	30	29	13	16	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0003	485	52	0	2	43	0	7	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0004	485	3	0	3	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0005	485	2	1	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0006	485	2	0	2	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0007	485	2	0	2	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0008	485	2	0	0	0	1	1	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0009	485	1	0	0	0	0	1	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0010	485	1	0	0	1	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0011	485	1	0	0	1	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0012	485	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0013	485	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0014	485	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	a0015	485	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKTIP1_chr19_3534174_3549030	0/0	a0001	209	210	2	47	144	2	15	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	1/1	a0002	209	160	45	37	41	9	26	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0003	209	44	40	3	0	0	1	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0004	209	14	6	1	0	0	7	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0005	32	5	5	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0006	209	2	0	0	2	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0007	209	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0008	209	1	0	0	0	0	1	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0009	209	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0010	209	1	0	0	1	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0011	209	1	1	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030