JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEKTIP1_chr19_3534174_3549030	0/0	a0012	209	1	1	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	a0013	209	1	0	0	0	1	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEK_chr9_27104225_27235174	0/0	a0001	1124	270	62	64	100	14	30	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0002	1124	29	13	8	2	0	6	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0003	1124	16	2	1	12	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	1/1	a0004	1124	5	0	1	0	2	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0005	1124	4	3	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0006	1124	3	0	0	2	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0007	1124	3	3	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0008	1124	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0009	1124	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0010	1124	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0011	1124	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0012	1124	1	0	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0013	1124	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0014	1124	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	a0015	1124	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TELO2_chr16_1488360_1515454	0/0	a0001	837	72	3	28	25	10	6	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0002	837	59	37	6	7	1	8	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0003	837	57	0	12	42	0	3	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	1/0	a0004	837	51	11	14	10	3	12	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0005	837	38	6	6	20	0	6	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0006	837	37	15	1	21	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0007	837	26	0	4	18	1	3	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0008	837	23	0	8	15	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0009	837	19	3	1	14	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0010	837	17	0	0	17	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0011	837	6	6	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0012	837	6	0	0	6	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0013	837	5	0	1	4	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0014	837	4	4	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0015	837	4	4	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0016	837	2	0	1	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0017	837	2	0	0	0	2	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0018	837	2	2	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0019	837	2	0	0	2	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0020	837	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0021	837	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/1	a0022	837	1	0	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0023	837	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0024	837	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0025	837	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0026	837	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0027	837	1	0	0	0	1	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0028	837	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0029	837	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0030	837	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0031	837	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0032	837	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	a0033	837	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454