JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEN1_chr17_75974240_76005586	1/1	a0001	123	379	96	75	150	14	42	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	a0002	123	1	0	1	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TENM1_chrX_124370903_125209312	1/1	a0001	2732	123	24	18	59	5	15	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0002	2732	4	4	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0003	2732	4	3	1	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0004	2732	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0005	2732	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0006	2732	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0007	2732	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0008	2354	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0009	2732	1	0	0	0	0	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0010	2732	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0011	2732	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	a0012	2732	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM2_chr5_166974029_168269157	0/0	a0001	2774	42	34	4	0	0	4	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0002	2774	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0003	2774	2	1	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0004	2774	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0005	2774	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0006	2774	1	0	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0007	2774	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0008	2774	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	a0009	2774	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM3_chr4_182238402_182808024	0/0	a0001	2699	131	59	31	25	4	12	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0002	2699	1	0	0	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0003	2699	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0004	2699	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0005	2699	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0006	2699	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0007	2699	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0008	2699	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0009	2699	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	a0010	2699	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM4_chr11_78647829_79446030	1/1	a0001	2769	76	45	13	4	4	8	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0002	2769	3	2	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0003	2769	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0004	2769	2	1	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0005	2769	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0006	2769	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0007	2769	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0008	2769	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0009	2769	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0010	2769	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0011	2769	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0012	2769	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	a0013	2769	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENT2_chr5_79607441_79693246	1/1	a0001	484	340	87	50	149	12	40	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	a0002	484	2	0	0	2	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	a0003	484	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	a0004	484	1	0	0	1	0	0	copy fasta	TENT2	chr5	79607441	79693246