JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TENT4A_chr5_6708432_6762044	1/1	a0001	792	382	89	76	162	14	39	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	a0002	792	2	2	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	a0003	792	1	0	0	0	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	a0004	792	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	a0005	792	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	a0006	792	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4B_chr16_50148306_50240310	1/1	a0001	713	306	88	59	117	12	28	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	a0002	713	3	0	0	3	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	a0003	717	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	a0004	713	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	a0005	713	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT5A_chr6_81740730_81757681	0/0	a0001	447	236	49	38	117	10	22	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0002	437	81	12	25	32	3	9	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	1/1	a0003	442	75	13	9	41	1	9	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0004	452	43	15	8	14	1	5	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0005	442	3	2	1	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0006	432	3	1	1	0	1	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0007	457	2	0	0	1	0	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0008	452	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0009	442	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	a0010	447	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5B_chr1_27000020_27017850	1/1	a0001	425	164	66	34	38	7	17	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0002	425	103	4	23	61	4	11	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0003	425	12	6	3	1	2	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0004	425	2	2	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0005	425	2	0	1	0	1	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0006	425	1	0	1	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0007	421	1	0	0	0	0	1	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0008	425	1	0	0	0	0	1	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0009	425	1	1	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	a0010	425	1	1	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5C_chr1_117601048_117633389	1/1	a0001	391	343	73	59	165	8	36	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	a0002	391	50	23	4	21	0	2	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	a0003	391	1	0	1	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5D_chrX_80415447_80450309	1/0	a0001	389	222	49	23	115	5	29	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/1	a0002	389	73	20	29	12	6	5	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	a0003	389	1	0	1	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	a0004	389	1	0	1	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	a0005	389	1	1	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TEP1_chr14_20360667_20418501	1/1	a0001	2627	68	1	17	35	6	7	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0002	2627	41	7	4	24	0	6	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0003	2627	30	0	4	21	1	4	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0004	2627	25	3	10	11	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0005	2627	18	10	2	4	0	2	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0006	2627	17	1	0	16	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0007	2627	14	2	4	7	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0008	2627	11	0	6	3	0	2	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0009	2627	10	0	1	7	2	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0010	2627	10	0	7	3	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	a0011	2627	8	5	0	3	0	0	copy fasta	TEP1	chr14	20360667	20418501