JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEPSIN_chr17_81223277_81244055	0/0	a0003	593	7	7	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0004	593	7	4	3	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0005	593	5	0	0	5	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0006	593	4	4	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0007	593	3	0	2	0	1	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0008	593	2	0	0	0	0	2	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0009	593	2	0	2	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0010	593	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0011	593	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0012	593	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0013	593	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0014	593	1	0	1	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0015	593	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0016	593	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0017	601	1	0	0	0	1	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	a0018	32	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TERB1_chr16_66749640_66806584	1/1	a0001	727	215	75	36	65	7	30	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0002	727	131	9	23	79	5	15	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0003	727	1	0	0	0	0	1	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0004	727	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0005	727	1	1	0	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0006	727	1	0	1	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0007	727	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	a0008	727	1	1	0	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB2_chr15_44951687_44984229	0/0	a0000	0	3	0	0	3	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	1/1	a0001	220	337	88	54	151	14	28	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	a0002	220	3	1	0	2	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	a0003	220	2	2	0	0	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	a0004	220	1	1	0	0	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERF1_chr8_73003864_73053123	1/1	a0001	439	334	91	63	119	14	45	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	a0002	440	3	1	0	2	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	a0003	441	3	0	3	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	a0004	439	1	0	0	0	0	1	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	a0005	108	1	0	0	1	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF2IP_chr16_75642773_75662432	1/1	a0001	399	379	88	75	164	13	37	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	a0002	399	7	0	3	0	1	3	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	a0003	399	2	0	0	2	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	a0004	399	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	a0005	399	1	0	0	1	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2_chr16_69350567_69391007	1/1	a0001	542	332	85	66	127	14	38	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	a0002	542	4	4	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	a0003	542	2	0	0	0	0	2	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	a0004	542	1	1	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	a0005	500	1	0	0	1	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERT_chr5_1248167_1300068	1/1	a0001	1132	389	95	70	156	16	50	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	a0002	1132	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	a0003	487	1	0	0	1	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	a0004	1132	1	1	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TESC_chr12_117033923_117104416	1/1	a0001	214	310	98	50	116	11	33	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	a0002	214	1	0	0	0	0	1	copy fasta	TESC	chr12	117033923	117104416