Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AACS_chr12_125060435_125148316	0/0	a0003	672	1	0	0	0	0	1	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0004	672	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0005	672	1	0	1	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0006	672	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0007	672	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0008	672	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0009	672	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	a0010	672	1	0	1	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AADACL2_chr3_151728927_151766339	0/1	a0001	401	277	68	53	115	12	28	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	1/0	a0002	401	141	17	26	79	6	12	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	a0003	401	3	0	0	3	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	a0004	401	3	0	0	3	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	a0005	401	1	1	0	0	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	a0006	401	1	0	1	0	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	a0007	401	1	0	0	1	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	a0008	401	1	0	0	1	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL3_chr1_12711110_12733760	1/0	a0001	407	241	42	49	107	11	31	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0002	12	73	9	11	48	3	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0003	407	30	4	7	13	0	6	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/1	a0004	407	22	13	4	1	1	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0005	407	21	13	3	1	1	3	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0006	407	15	0	0	15	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0007	407	9	9	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0008	407	5	0	0	5	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0009	407	5	3	0	0	0	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0010	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0011	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0012	407	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0013	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0014	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0015	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0016	407	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0017	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0018	407	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0019	407	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	a0020	407	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL4_chr1_12639085_12672076	1/1	a0001	407	308	80	64	124	10	28	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	a0002	407	1	0	0	1	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	a0003	407	1	0	0	1	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADAC_chr3_151809116_151833488	0/1	a0001	399	290	68	58	118	12	33	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	1/0	a0002	399	141	26	21	80	6	7	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	a0003	399	7	0	0	7	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	a0004	399	1	0	1	0	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	a0005	399	1	0	0	1	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAT_chr4_170055222_170094956	1/1	a0001	425	378	94	62	154	18	48	copy fasta	AADAT	chr4	170055222	170094956
AAGAB_chr15_67195667_67259661	1/1	a0001	315	208	71	35	73	8	19	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	a0002	315	167	9	26	109	6	17	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	a0003	315	3	3	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	a0004	315	1	1	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	a0005	315	1	0	1	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661