Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACACB_chr12_109111587_109273226	0/0	a0021	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0022	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0023	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0024	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0025	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0026	1760	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0027	2458	1	0	1	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0028	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0029	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0030	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0031	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0032	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0033	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0034	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0035	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0036	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0037	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0038	2458	1	0	0	0	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0039	2458	1	1	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0040	2458	1	0	0	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	a0041	2458	1	0	0	0	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACAD10_chr12_111681053_111762099	1/1	a0001	1059	311	74	50	150	4	31	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0002	1059	8	7	1	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0003	1059	6	0	2	0	2	2	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0004	1059	3	0	0	0	0	3	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0005	32	1	0	0	1	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0006	1059	1	0	0	0	0	1	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0007	1059	1	1	0	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0008	1005	1	0	1	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0009	1059	1	1	0	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0010	1059	1	0	0	1	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0011	1059	1	0	0	0	0	1	copy fasta	ACAD10	chr12	111681053	111762099
ACAD10_chr12_111681053_111762099	0/0	a0012	1059	1	1	0	0	0	0	copy fasta	ACAD10	chr12	111681053	111762099
ACAD11_chr3_132553141_132664809	1/1	a0001	780	249	65	33	117	11	21	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0002	780	34	0	8	22	1	3	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0003	780	24	22	2	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0004	780	3	1	0	0	0	2	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0005	780	1	0	1	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0006	780	1	1	0	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0007	780	1	1	0	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0008	780	1	0	1	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0009	780	1	0	0	1	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	0/0	a0010	780	1	0	1	0	0	0	copy fasta	ACAD11	chr3	132553141	132664809
ACAD8_chr11_134248568_134270855	0/0	a0001	415	438	88	81	211	16	42	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	a0002	415	6	6	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	a0003	415	2	1	1	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	a0004	377	1	0	0	1	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	0/0	a0005	415	1	1	0	0	0	0	copy fasta	ACAD8	chr11	134248568	134270855
ACAD9_chr3_128874620_128918114	1/0	a0001	621	362	89	71	143	18	40	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	a0002	621	3	0	0	3	0	0	copy fasta	ACAD9	chr3	128874620	128918114