JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BEGAIN_chr14_100532147_100592417	1/1	a0001	612	320	96	57	128	9	28	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	a0002	612	2	0	0	2	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	a0003	612	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	a0004	616	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	a0005	612	1	0	0	0	1	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	a0006	612	1	0	1	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEND2_chrX_18157931_18225886	1/1	a0001	799	205	56	46	68	9	24	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0002	799	78	9	3	56	2	8	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0003	799	6	4	2	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0004	799	2	2	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0005	799	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0006	799	1	1	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0007	799	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	a0008	761	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND3_chr6_107060182_107120515	1/1	a0001	828	362	85	66	158	14	37	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	a0002	828	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	a0003	828	1	0	0	0	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	a0004	828	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	a0005	828	1	0	0	0	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	a0006	828	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	a0007	828	1	0	0	0	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND4_chr4_42105853_42157655	1/1	a0001	534	216	84	47	42	10	31	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0002	534	3	3	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0003	534	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0004	534	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0005	534	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0006	534	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0007	534	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0008	534	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	a0009	534	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND5_chr1_48722519_48781891	1/1	a0001	421	339	78	62	149	12	36	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	a0002	421	1	1	0	0	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	a0003	421	1	1	0	0	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	a0004	421	1	0	0	1	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND6_chr6_56950107_57032346	1/1	a0001	279	204	66	38	80	4	14	copy fasta	BEND6	chr6	56950107	57032346
BEND7_chr10_13436088_13534014	1/1	a0001	413	294	83	68	97	10	34	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	a0002	413	3	3	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	a0003	413	1	0	0	1	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	a0004	413	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	a0005	413	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEST1_chr11_61945351_61969461	1/1	a0001	585	399	93	74	164	18	48	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0002	585	3	0	0	3	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0003	585	2	2	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0004	585	2	2	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0005	585	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0006	585	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0007	585	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	a0008	585	1	1	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST2_chr19_12746791_12763458	1/0	a0001	509	345	78	61	150	14	41	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/1	a0002	509	12	0	9	0	1	1	copy fasta	BEST2	chr19	12746791	12763458