JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX10_chr9_100297084_100357942	0/0	a0003	929	1	1	0	0	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	a0004	929	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	a0005	929	1	1	0	0	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	a0006	929	1	0	0	1	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX11_chrX_70523940_70913711	1/1	a0001	925	155	50	26	53	7	17	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0002	925	36	14	4	12	0	6	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0003	925	26	10	1	14	0	1	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0004	925	6	0	4	2	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0005	925	3	0	0	3	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0006	37	1	0	0	1	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0007	925	1	0	0	1	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX11_chrX_70523940_70913711	0/0	a0008	928	1	0	0	1	0	0	copy fasta	TEX11	chrX	70523940	70913711
TEX12_chr11_112162372_112177556	1/1	a0001	123	387	90	81	164	14	36	copy fasta	TEX12	chr11	112162372	112177556
TEX12_chr11_112162372_112177556	0/0	a0002	123	1	0	1	0	0	0	copy fasta	TEX12	chr11	112162372	112177556
TEX13A_chrX_105213929_105225694	1/1	a0001	409	285	63	46	132	13	29	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0002	409	4	4	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0003	409	2	2	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0004	409	2	1	1	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0005	409	1	0	0	1	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0006	409	1	0	0	0	0	1	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0007	409	1	0	0	0	0	1	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0008	409	1	1	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0009	409	1	0	0	0	0	1	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0010	409	1	1	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	a0011	409	1	0	0	1	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13B_chrX_107975864_107987370	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	1/1	a0001	312	257	60	51	106	12	26	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	a0002	312	52	17	6	28	1	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	a0003	312	2	0	0	0	0	2	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	a0004	312	1	0	1	0	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13C_chrX_125314871_125330214	1/1	a0001	993	187	9	33	101	13	29	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0002	993	31	0	4	24	0	3	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0003	995	30	27	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0004	993	17	17	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0005	993	11	9	2	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0006	972	11	8	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0007	993	2	0	2	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0008	993	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0009	993	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0010	178	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0011	993	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0012	993	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0013	951	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0014	953	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0015	993	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0016	993	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0017	990	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0018	993	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0019	993	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	a0020	993	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214