JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX13C_chrX_125314871_125330214	0/0	a0021	993	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13D_chrX_124327660_124341863	0/0	a0001	714	160	1	32	103	4	20	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	1/1	a0002	714	68	19	13	27	4	3	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0003	714	29	23	6	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0004	652	26	4	4	9	1	8	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0005	714	13	10	3	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0006	714	9	6	0	2	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0007	652	7	2	1	3	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0008	714	2	2	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0009	590	2	0	0	0	2	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0010	714	2	0	0	2	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0011	714	2	2	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0012	714	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0013	590	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0014	678	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0015	474	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0016	714	1	0	0	0	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0017	652	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0018	659	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0019	714	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0020	714	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0021	714	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0022	193	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0023	714	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	a0024	714	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX14_chr17_58551678_58697045	1/1	a0001	1451	290	80	49	115	11	33	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0002	1451	21	3	12	0	3	3	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0003	1451	3	1	2	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0004	1451	2	2	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0005	1451	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0006	1451	1	0	0	0	0	1	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0007	1451	1	1	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0008	1277	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0009	1451	1	1	0	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0010	1451	1	0	0	0	0	1	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0011	1451	1	0	1	0	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX14_chr17_58551678_58697045	0/0	a0012	573	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX15_chr8_30826544_30918008	1/1	a0001	3172	100	9	27	40	4	18	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0002	3172	43	17	1	15	3	7	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0003	3172	39	27	8	3	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0004	3172	24	0	0	20	0	4	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0005	3172	19	0	13	6	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0006	3172	8	0	3	0	1	4	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0007	3172	7	7	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0008	3172	5	5	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0009	3172	4	0	2	2	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0010	3172	4	4	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0011	3172	4	4	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0012	3172	3	0	3	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0013	3172	2	0	0	2	0	0	copy fasta	TEX15	chr8	30826544	30918008