JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX15_chr8_30826544_30918008	0/0	a0014	3172	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0015	3172	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0016	3172	2	0	0	2	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0017	3172	2	0	0	0	0	2	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0018	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0019	3172	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0020	3172	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0021	3172	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0022	3172	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0023	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0024	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0025	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0026	3172	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0027	3172	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0028	3172	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0029	3172	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0030	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0031	3172	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0032	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0033	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0034	3172	1	0	0	0	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0035	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0036	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0037	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0038	3172	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0039	3172	1	0	0	0	1	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0040	3172	1	0	0	0	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	a0041	3172	1	0	0	0	1	0	copy fasta	TEX15	chr8	30826544	30918008
TEX19_chr17_82354247_82368775	1/1	a0001	164	374	88	69	163	16	36	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	a0002	164	4	4	0	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	a0003	164	1	0	0	1	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	a0004	164	1	0	1	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX22_chr14_105393538_105418859	1/1	a0001	150	359	83	77	139	16	42	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	a0002	138	5	5	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	a0003	150	1	0	0	1	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	a0004	150	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	a0005	130	1	0	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	a0006	150	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX261_chr2_70980942_70999873	1/1	a0001	196	423	94	75	188	14	50	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	a0002	196	7	0	3	4	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	a0003	42	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	a0004	196	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX264_chr3_51666252_51709323	1/1	a0001	313	209	51	43	76	11	26	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	0/0	a0002	313	77	7	17	50	1	2	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	0/0	a0003	313	14	12	2	0	0	0	copy fasta	TEX264	chr3	51666252	51709323
TEX26_chr13_30927656_30980500	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	1/1	a0001	289	408	92	74	179	16	45	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	a0002	289	2	2	0	0	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	a0003	289	1	0	0	0	0	1	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	a0004	141	1	0	0	1	0	0	copy fasta	TEX26	chr13	30927656	30980500