JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX38_chr1_46666854_46678594	1/1	a0001	206	149	27	39	47	14	20	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	a0002	206	122	48	4	60	1	9	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	a0003	206	121	16	24	66	1	14	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	a0004	206	17	0	4	11	0	2	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	a0005	206	5	0	1	4	0	0	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	a0006	206	3	3	0	0	0	0	copy fasta	TEX38	chr1	46666854	46678594
TEX38_chr1_46666854_46678594	0/0	a0007	206	1	0	0	0	0	1	copy fasta	TEX38	chr1	46666854	46678594
TEX43_chr5_126626705_126641284	1/1	a0001	134	422	88	80	192	14	46	copy fasta	TEX43	chr5	126626705	126641284
TEX43_chr5_126626705_126641284	0/0	a0002	134	1	0	0	1	0	0	copy fasta	TEX43	chr5	126626705	126641284
TEX43_chr5_126626705_126641284	0/0	a0003	134	1	0	0	1	0	0	copy fasta	TEX43	chr5	126626705	126641284
TEX44_chr2_231587864_231599276	0/1	a0001	395	358	76	65	170	12	34	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	1/0	a0002	395	19	6	3	0	4	5	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0003	391	13	0	0	13	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0004	395	11	1	6	1	2	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0005	395	9	1	0	7	0	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0006	225	9	0	1	8	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0007	395	6	6	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0008	395	5	4	1	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0009	395	2	0	0	0	0	2	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0010	396	2	2	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0011	395	1	1	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0012	395	1	0	0	1	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0013	395	1	0	0	0	0	1	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	a0014	395	1	1	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX45_chr19_7492548_7513450	1/0	a0001	505	247	39	48	116	10	33	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/1	a0002	505	91	11	20	44	6	9	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0003	505	25	8	0	16	0	1	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0004	505	15	15	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0005	505	13	8	3	0	0	2	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0006	505	11	0	0	11	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0007	505	7	0	1	6	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0008	505	7	7	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0009	505	5	3	1	0	1	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0010	505	4	0	0	4	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0011	505	3	0	2	0	1	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0012	505	2	2	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0013	505	1	0	0	0	0	1	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0014	505	1	0	0	1	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0015	505	1	1	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0016	505	1	1	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0017	505	1	0	1	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/0	a0018	505	1	1	0	0	0	0	copy fasta	TEX45	chr19	7492548	7513450
TEX46_chr1_23005834_23020852	1/1	a0001	121	433	97	82	198	12	42	copy fasta	TEX46	chr1	23005834	23020852
TEX46_chr1_23005834_23020852	0/0	a0002	121	1	1	0	0	0	0	copy fasta	TEX46	chr1	23005834	23020852
TEX47_chr7_88789106_88800737	1/1	a0001	253	343	65	60	171	13	32	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	a0002	253	61	19	16	19	4	3	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	a0003	253	40	8	3	19	1	9	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	a0004	253	3	0	0	3	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	a0005	253	2	2	0	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	a0006	253	1	0	1	0	0	0	copy fasta	TEX47	chr7	88789106	88800737