JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TEX47_chr7_88789106_88800737	0/0	a0007	181	1	0	0	1	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	a0008	253	1	0	0	1	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX48_chr9_114661434_114687192	0/0	a0001	120	144	43	19	69	1	12	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/1	a0002	120	140	36	35	51	6	11	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	1/0	a0003	120	82	5	12	45	5	14	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	a0004	120	48	4	3	32	0	9	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	a0005	120	5	4	1	0	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	a0006	120	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	a0007	120	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	a0008	120	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX49_chr12_48722435_48770790	1/1	a0001	131	319	82	64	118	14	39	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	a0002	131	2	0	2	0	0	0	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	a0003	131	1	0	0	0	0	1	copy fasta	TEX49	chr12	48722435	48770790
TEX50_chr1_173630338_173642130	1/1	a0001	177	404	88	72	186	14	42	copy fasta	TEX50	chr1	173630338	173642130
TEX51_chr2_126893890_126907097	1/1	a0001	166	369	83	62	173	15	34	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	a0002	71	13	0	7	0	1	5	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	a0003	166	9	0	3	5	0	1	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	a0004	166	3	3	0	0	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	a0005	166	2	2	0	0	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	a0006	166	2	0	0	2	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX52_chr12_2844046_2862039	1/1	a0001	305	404	67	76	195	14	50	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0002	305	17	16	1	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0003	305	4	3	1	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0004	305	3	3	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0005	305	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0006	305	1	0	0	1	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0007	305	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0008	305	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0009	305	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	a0010	305	1	1	0	0	0	0	copy fasta	TEX52	chr12	2844046	2862039
TEX53_chr9_114651304_114662805	1/1	a0001	70	400	96	70	176	14	42	copy fasta	TEX53	chr9	114651304	114662805
TEX54_chr11_62827321_62837841	1/1	a0001	124	410	90	65	193	16	44	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	a0002	124	2	2	0	0	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	a0003	124	1	0	0	1	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	a0004	124	1	0	1	0	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX55_chr3_119141165_119156456	0/1	a0001	536	146	20	26	77	4	18	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0002	536	85	2	20	50	5	8	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0003	536	69	7	4	48	3	7	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0004	536	67	24	21	12	3	7	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0005	535	39	0	4	35	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	1/0	a0006	536	25	16	4	0	1	3	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0007	536	8	8	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0008	536	7	7	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0009	536	3	3	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0010	536	3	0	0	3	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0011	536	3	0	0	3	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0012	536	2	0	0	2	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0013	536	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0014	536	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	a0015	536	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456