JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TFB2M_chr1_246535561_246571261	0/0	a0003	396	1	0	0	1	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	a0004	396	1	0	0	0	0	1	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	a0005	396	1	0	1	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFCP2L1_chr2_121211587_121290202	1/1	a0001	479	365	87	67	161	12	36	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	a0002	479	8	0	0	6	0	2	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	a0003	479	4	3	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	a0004	479	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2_chr12_51088656_51178135	1/1	a0001	502	348	92	72	132	12	38	copy fasta	TFCP2	chr12	51088656	51178135
TFDP1_chr13_113579753_113646473	1/1	a0001	410	346	94	66	131	14	39	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	a0002	415	1	0	0	1	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	a0003	410	1	0	0	0	0	1	copy fasta	TFDP1	chr13	113579753	113646473
TFDP2_chr3_141939428_142154544	1/1	a0001	446	252	82	46	92	8	22	copy fasta	TFDP2	chr3	141939428	142154544
TFDP3_chrX_133211662_133223354	1/1	a0001	405	225	43	42	106	8	24	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0002	405	15	15	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0003	405	6	6	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0004	405	4	0	4	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0005	405	2	0	0	2	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0006	303	1	0	0	1	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0007	338	1	0	0	1	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0008	405	1	0	1	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	a0009	405	1	0	0	0	1	0	copy fasta	TFDP3	chrX	133211662	133223354
TFE3_chrX_49023726_49048357	0/0	a0000	0	2	0	1	0	0	1	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	1/1	a0001	575	247	73	49	86	9	28	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0002	575	2	2	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0003	575	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0004	131	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0005	131	1	0	0	0	0	1	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0006	232	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0007	575	1	1	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0008	575	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0009	575	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0010	576	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	a0011	51	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFEB_chr6_41678978_41740608	1/1	a0001	476	397	91	81	163	14	46	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	a0002	476	6	0	0	6	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	a0003	476	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	a0004	476	1	0	0	1	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	a0005	476	1	0	1	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEC_chr7_115930152_116035763	1/1	a0001	347	383	90	70	166	14	41	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	a0002	347	4	0	1	0	0	3	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	a0003	347	3	0	3	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	a0004	347	2	0	0	0	0	2	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	a0005	347	2	2	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFF1_chr21_42357282_42371535	1/1	a0001	84	467	95	83	224	15	48	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	a0002	84	2	0	1	0	1	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	a0003	84	2	0	2	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	a0004	84	2	2	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	a0005	84	1	1	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF2_chr21_42341357_42355994	1/1	a0001	129	449	96	85	204	12	50	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	a0002	129	2	0	0	2	0	0	copy fasta	TFF2	chr21	42341357	42355994